Polyodon spathula (Mississippi paddlefish): 121318025
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Entry
121318025 CDS
T07273
Name
(RefSeq) CCR4-NOT transcription complex subunit 2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121318025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121318025
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121318025
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121318025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
121318025
NCBI-ProteinID:
XP_041110152
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All DBs
Position
7:4112967..4156058
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AA seq
595 aa
AA seq
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MVLQVAERSEGKGYSPSILGCRIHSHLGSAGRREINAVTNSMFGASRKKFVEGVESDYHD
DSMYYSQSSIFPPHRSEKDMLQSPSPSTSGQLSQLGASLYGPQSCERSIIEKIEEARWDA
LARGEAGALGVQMRGMSNNNPQLNRSLSQGPQLQSHVTPTTGVPTMSLHTPPSPSRGILP
MNPRNMMNHSQVGQGIGMPGRTNSISSSGLGSPNRSSPSIICMPKQQPSRQPFTINSMSG
FGMNRNQSFGMTNSLSSNIFNGTDGSENVTGLDLSDFPALADRSRREGSGNPTPLLNPLA
GRAPYGEHFFEVGMVTKPASEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNSSGK
NASNTDGPKFPGDKGSTVQNNNQQKKGIQVLPDGRVTNIPSGMVTDQFGMIGLLTFIRAA
ETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASAPCRPQDIDFHVPSEYLTNIHI
RDKLAAIKLSRYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEP
TMKTNSYERGTYYFFDCLNWRKVAKVKEFHLEYDKLEERPHVPSTFNYNPAQQAF
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggttttgcaggtcgcggagaggtcagagggtaaaggctattcacccagcatcctcggt
tgtagaatacacagccatcttggatctgcggggagaagagaaattaatgcggtgacaaac
agcatgtttggtgcttcaagaaagaagtttgtagagggggtcgaaagcgactaccacgat
gacagcatgtactacagccagtcgtccatcttcccacctcatcggtcagaaaaagacatg
ctgcaatctccatcaccatcaacgtcaggtcaactgtctcagttaggtgcaagtttatac
ggcccacaaagctgtgagcgttccataatagagaaaattgaagaggcaagatgggatgcc
ctggcgaggggggaggcaggtgcactaggtgtccaaatgagggggatgagcaacaacaac
cctcagttaaatcgcagcttatcacaaggtccccagttacagagccatgtaactccgacg
acaggagtgccgaccatgtctctccatactccaccgtcaccaagcaggggcattttgccc
atgaatcccaggaatatgatgaaccactcccaggtcgggcagggaatcggcatgccagga
cggacgaacagtataagcagttcagggttaggcagtccaaacagaagctcgcccagcata
atatgtatgccaaagcaacagccctctcggcagccctttaccataaacagtatgtctgga
tttggaatgaacaggaatcagtcgtttgggatgaccaactcgttatcgagcaacattttt
aatgggacagacgggagtgaaaatgtgacggggttggacctctcagactttcctgcacta
gcggacagaagtagaagggaaggaagcggcaatccaactccgttgttaaatccattggca
gggagggctccttatggtgagcatttttttgaagttgggatggtaacaaaaccagcaagt
gaacagtctcaagatttctccatccacaacgaggatttccctgcattgccaggctccagc
tataaagatcctacgtcaagtaacgacgacagtaaatccaacttgaactcttcgggcaaa
aatgcgtccaatacagatggacctaaattccccggggacaagggttcgactgtgcaaaac
aacaaccagcagaagaaaggcattcaagtgttaccggacggccgggtgactaacattcct
tcagggatggtaacggaccagtttggaatgatcggattgttaacattcatccgggcagcg
gagacggaccctggaatggtacaccttgcattaggaagtgacctgacaacactaggtctc
aatctcaactctccagaaaatctctatcccaaatttgcatcaccatgggcatcagcccct
tgtcgacctcaagatattgacttccatgttccatccgagtatttaacgaacattcacata
agggataagctggctgcaataaaactgtcccgatacggagaagatcttcttttctacttg
tactacatgaacggaggagaccttttacaacttttagcggcggtagagctattcaaccga
gactggaggtaccacaaagaagagagagtgtggattaccagggcgccgggaatggagcca
acaatgaagaccaattcctatgagagggggacgtactacttctttgattgtcttaactgg
aggaaggtagctaaggtaaaggagtttcacctggaatacgacaaactagaagaaaggcct
catgtgccgtcaaccttcaactataatccagctcagcaagccttctaa
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