Polyodon spathula (Mississippi paddlefish): 121318036
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Entry
121318036 CDS
T07273
Name
(RefSeq) TBC1 domain family member 15-like
KO
K20168
TBC1 domain family member 15
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121318036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121318036
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
121318036
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
PH_RBD
RabGap-TBC_2
Med10
Motif
Other DBs
NCBI-GeneID:
121318036
NCBI-ProteinID:
XP_041110175
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All DBs
Position
7:4570808..4585470
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AA seq
669 aa
AA seq
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MAAPAAGKVVYEQDGIFIHSSTERNEDQDSLISGILRIIEKDGELVVEYKPLEDGVDLSN
MLYAGKDSSSVVEWTQSPTEKTQKNAEHQHSYEAEWDMINTVSFKKKPYTNGEGTSNHVH
ERSKWAFFFNVVDLKTIKIKLEGWSRLVFCLKDETSLPALHFHQGGSDLFIDCLKNYVLM
NESLLDERVLIVSNCNKALSQSFENLFDDTTFGLVQKFRKDPYTTTMGGFSKVTNYLFDA
FRGADVEHQQRPAAEMADILNEVIPGLEINHQEEPGFEVIKRIDLGTKPDVQRREPVSVE
DWNKNMDTEGRIQNVHDLKQRIFNGGLCHAVRKEAWKFLLGYFPWNSTRDDRKVSQKRKI
DEYFRMKLQWKSVSEEQEKRNSRLRDYRSLIEKDVNRTDRTNTFYEGPDNPGLILLHDIL
MTYCMYDFDLGYVQGMSDLLSPILYVMENEVDAFWCFVSFMDQMHHNFEEQMQGMKTQLI
QLSNLLRLLDLAFWNYLESQDSGYLYFCFRWLLIHFKREFSFQDVLRLWEVMWTGLPCQN
FHLLVCCAILDSEKQKIMDEHYGFNEILKHINELSMKLDVEEVLRKAEAICFQIKNCKDL
PYAVREILEVIPDTAAPAGEICEHGALDTRSPPNATCTDELQPNSVPNGRDGNSGRRETA
QHVYKLAHI
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcctgcagctggcaaggttgtgtatgagcaagatggcatttttattcactca
agcacagaaagaaatgaagaccaagattccctcatttcaggcatacttcggattattgaa
aaggatggtgaattagtggtggaatataaaccactggaagatggtgttgatttatcaaat
atgctttatgctggaaaggattccagttcagttgtagaatggacacagagtcccacagaa
aagacacaaaagaatgcagaacatcagcacagctatgaagctgagtgggatatgatcaac
accgtctccttcaaaaagaaaccttacacaaatggagaagggacatcaaaccatgtacat
gaaagaagcaaatgggccttcttctttaatgtggttgacctcaaaacaattaaaataaag
ctggagggctggtcacgtcttgtcttctgccttaaagatgaaacttccttacctgccctt
catttccatcaaggaggcagtgatttgttcatagattgccttaagaactatgtgctgatg
aatgagtctctacttgatgaaagagttttaattgtcagcaactgcaacaaggctctttct
cagtcctttgagaacttgtttgatgataccacgtttggccttgttcaaaaatttaggaaa
gatccttacacaacaacaatgggaggcttttctaaagttaccaactacttatttgatgca
tttagaggggctgatgttgaacaccaacaacgaccagctgcagaaatggcagacattctg
aatgaggtcattccagggcttgaaatcaaccaccaggaggagccaggctttgaagtaatc
aaaagaattgatttgggcacaaagccagatgttcagagaagagaaccagtttctgttgaa
gactggaataagaatatggacacagaaggaagaatacaaaatgttcatgatttaaagcaa
agaattttcaatgggggactttgccatgcagtaagaaaagaggcttggaaatttttgctg
ggttattttccttggaacagcacgagagacgacagaaaggtttcgcaaaaaagaaaaatt
gacgagtacttcagaatgaaactccagtggaaatcagtcagtgaagagcaagaaaaaaga
aattcaagattaagagattatagaagcctcatagagaaagatgtaaacagaacagaccga
accaacacgttttatgaaggtccagataacccaggacttattttacttcacgatattctg
atgacatactgtatgtatgattttgatcttgggtatgttcagggaatgagtgatttactt
tctccaattctttatgtaatggaaaatgaagtggatgccttctggtgctttgtgtccttc
atggatcagatgcaccataattttgaggagcagatgcaggggatgaagacccagttgatt
cagctcagcaatttactgcgcttgctagaccttgcattctggaattaccttgaatcgcaa
gattcagggtacctctacttctgtttccggtggcttctaatccacttcaaacgggaattc
agcttccaggatgtactgcggctatgggaggtgatgtggacaggattaccttgccaaaac
ttccacctgcttgtttgctgtgccatattggattctgagaaacagaaaataatggatgaa
cattacggatttaatgaaattctcaagcacatcaacgagctttccatgaaattggacgtg
gaagaagtacttcgcaaagctgaggccatctgttttcagataaaaaattgcaaggattta
ccttatgcagttcgtgagatcctggaagtgatacctgacacagctgctcctgcaggagag
atatgcgaacatggagcacttgataccaggagcccacctaatgcaacttgcacagatgag
ttacagccaaactctgtgccaaatggaagagacggaaattcagggcgcagggagactgca
caacatgtttacaaattggcacatatatag
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