Polyodon spathula (Mississippi paddlefish): 121318118
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Entry
121318118 CDS
T07273
Name
(RefSeq) AT-rich interactive domain-containing protein 2-like
KO
K11765
AT-rich interactive domain-containing protein 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121318118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121318118
03021 Transcription machinery [BR:
pspa03021
]
121318118
03036 Chromosome and associated proteins [BR:
pspa03036
]
121318118
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Helix-turn-helix
ARID
121318118
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121318118
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
121318118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARID
RFX_DNA_binding
FOXP-CC
TSTD2_N
Motif
Other DBs
NCBI-GeneID:
121318118
NCBI-ProteinID:
XP_041110364
LinkDB
All DBs
Position
7:complement(9218933..9252217)
Genome browser
AA seq
1773 aa
AA seq
DB search
MANSTGKNQPDQRRKGLAFLDELRQFHRSRGSPFRKIPVVGGRELDLHALYTRVITLGGF
AKVSDKNQWGELVEDFNFPRSCSNSDFVLKQYYLRYLEKYEKVHHFGEDDEEVQPGNPKP
LLPIGAIPASYNYQQHTVSDYLRQSYGLSMESVTACDYNKLVLSLLSGLPNEVDFAINVC
TLLSNESKHVMQLEKDPKLVTLLLAHAGIFDDTLGSFCTVFGDEWKEKTSRDFIKFWKDV
VEDSEVRDLIADKSSTSQDGTTKDSTWDSLFHPPRNVGINDVEGQRVLQIAVILRNLSFE
EANVKLLAANRTCLRFLLLCAHCHFISLRQLGLDTLGNVAGELQLDPIDFRTTHLMFHTI
TKCLMSRDRFLKMRAMEILGNLCKADDNGVLICEYVDQESYREIMCHLTLPDVLLVISTL
EVLYMLTELGDGTCTKIASVDKSIDLLVRLVSIDIHTFGPDALTVVKLIEHQSANNQVVS
EIRPQSVEHIPAQTHGTPAPATRSVPVQSTATPPGIVEIDGEKFLSRWLNAHFEAHLESS
VSRSEMYSDYLSICSKMARGGILTSTGFYKCLRGIFPNHTIKRVDDPKNSGQAHIHIVGI
RRRAIPLPVQLYYQQQASPATPEISQTPPTGLPHGPQSVGNHFPRTPVSSLTANLATSQM
AFTVQGVSSAAQTVSRISQNQPAQAQQHQNTAMTVIQNKPGEVMKATVIQGSISQSAVPV
NVSVVQNHNSTAHQPSVTVVTSHQLLHHSPVIPSGTPVTVFQQGLPQTHIIAGRVQNIPA
VSNVSASQGQQLVTTSSLPMQTSQQPGTTGHQQETVILAPQQYISTSTPSIVSCTSVQNF
QVAGGQVFTIAGVQSPQASRVTFQNIAPKPVPSQTTVMSQPMHQPQQPQQPSVVIVGPNP
QQNPAYASAIHQIVLSNPTSIPASQTVQLAGQASITQSPSQSPGLATSSHVPQIVASPNT
MQMQGPPPTVSQMLSVKRQQQHHHLPPQPQMQVQPQPAPPPPGQPTSTESSLIKQLLLPK
RGPSTPGGKLILPAPQLPPPNNSRAQSPQVVYQVANNQNPGFGVQGQPQTQQLLVGQQNV
QLVQSSIQSQGTVQTVPISNLQILPGQLISTSSPATIIQGTAGNQVTFTVVPNTSFTTAA
VSQGSGSQIIAPAGISVSSSQPGVGLQVQTIPTSQVGQTSQSPTPLFKGDKIICQKEEEA
KDATGLHVHERKIEIMENSSLPEGAAKTSNGDSKDCETSTANLVNGKRYVDSSLPPSNSG
KNQLEASQCMQVTNGPLSEVNDNPANGMQCTEQADTQELKSDLRKSLVNGICDFEKGDGS
HLSKNIPNHKASKHVGNGEISPPEQQENSDPTRQDTAKADHSERMTNGPVVTNNALPIAN
APLEVYRKVSSNSAELSNGPVQSSLKSDLPQQQHPCVVMSLQSTASVTITTVNPFTTVSQ
SGTAVPQCVPSFEPWSSNGSNESRGVKRPAEDMDRGTVSGIPNKVGVRIVTISDPNNAGC
SATMVAVPAGADPSTVAKAAIENAAQQKQHQPPFVQGLVTQPSCISSTITVQAPQVSSTT
PPSVTPTSCQNSEHVRKPGQNFMCLWKSCKRWFQTPSQVFYHAATQHGSKDTYPGQCFWE
GCEPFPRQRLSFITHLQDKHCSREALLAGLKQEEQIQTGNQKTSKQQAAVGNTSSPRAQK
AIVNHPSAALMALRRGSRNLVFRDFTDEKEGPITKHIRLTAALTLKNIAKYSDCGRKLLK
RHENHLSVLALSNMETSTTLAKCLYELTHSTES
NT seq
5322 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattcgacggggaaaaatcaacctgatcagcgaaggaaaggactggctttcctg
gatgagctgcggcagttccatcggagcagaggatcgccgtttaggaagatcccagtagtg
ggtggaagagagttagatcttcacgctctgtacaccagagtcattactttaggtggattt
gcaaaggtctctgataagaatcagtggggtgaacttgtagaagactttaatttccctagg
agttgctccaactctgattttgttttaaaacagtattaccttcgttatttggaaaagtac
gaaaaagtccatcactttggagaagatgatgaggaggttcagcccggcaatccaaaacca
ttgcttcctattggtgcaattccagcttcctacaactaccagcaacacaccgtatcagat
tatcttcgccaaagctatgggctctccatggagtctgtcacagcatgcgattacaacaaa
ctggtgctttctcttttatctggactccctaatgaagtggattttgccattaatgtttgc
acacttctttcaaatgaaagcaaacatgtaatgcaacttgaaaaagaccctaaactcgtc
acgttattactagcccatgctggaatttttgatgacacgttaggaagtttttgtactgta
tttggggacgaatggaaagagaaaacatctcgggattttataaagttctggaaggacgtg
gtagaagatagcgaagtacgggacctcattgcagacaagagcagcacatcacaagatggt
acgactaaagacagcacttgggattctctcttccatcctcctcgaaatgttggcattaat
gacgttgaagggcagcgggtgcttcagattgcagttatacttagaaacctctcgtttgag
gaagcaaatgttaaacttttggcagctaatcggacatgtctgagattccttttactgtgt
gcccactgtcactttatttctctgaggcagttgggactggatacactgggcaatgtagca
ggagagcttcagttggatcctattgattttcgaactactcatcttatgtttcacactatc
acaaaatgtttaatgtcaagagataggttcttaaaaatgagggcgatggagatattggga
aacctgtgtaaagcagatgataatggagttctcatttgtgagtatgtggatcaggagtcc
tacagggagataatgtgtcatctcacattacctgatgtgctgcttgtaatctccacacta
gaggtgctatatatgcttacagaactgggagatgggacctgtacaaagatagcttctgtg
gacaagagtatagatctgctggtacgcttggtatccatagacatccacacatttggaccg
gatgctctcacagtggtgaagcttattgagcatcaaagcgctaataaccaagtggtgtca
gaaataaggccgcagtcagtggagcatatcccagcacagacgcatggaacaccagctcca
gcaacaagaagtgttcctgtgcaatcaactgctactccacctggcattgttgaaattgat
ggggagaagtttttatctcggtggctaaatgcacattttgaggcgcatcttgaaagctct
gtctctcgatccgagatgtactcggattacctttcaatttgcagtaaaatggctcgaggt
ggcatcttaacatctactggcttttataaatgcttaaggggcatctttccaaaccataca
ataaaaagagtggatgatcccaagaatagtggacaagcccatatccatatagttggaatt
cgcagaagggctattccacttccagtccagctctattaccagcaacaggcttctcctgct
actccagaaatatcccagactccaccaacaggcttgccccatggacctcagagtgtagga
aatcacttccctcggacaccggtcagtagccttactgccaatttggcaacctcacagatg
gccttcacggttcaaggagtctccagtgcggctcagactgtttctaggatatcccaaaac
cagcctgcccaggcccagcagcaccaaaacacagcaatgactgtgatccagaacaaaccc
ggcgaggttatgaaagcaacagtgatccagggctccatttctcagtcggctgttcccgtc
aatgtttctgttgttcagaaccacaacagtacagcgcaccagccttcagtgacagttgtc
acttcacaccaattgcttcaccactctccagttataccctctggaaccccggtcactgtc
tttcagcaagggctgcctcagactcacataatcgcaggcagggtgcagaatattccagcg
gtgtctaatgtttcagcctctcaagggcagcagctggtgactacatcatccctacccatg
cagacttctcagcagccaggaacaacgggccaccaacaggagacggtcatcctcgcaccc
cagcagtatatatccacttccacccccagtatcgtctcttgtacctcggtgcagaacttc
caagttgctggtggtcaggtgttcaccatagcaggcgtgcaaagccctcaggcgtctcgc
gtgaccttccagaacattgctcccaagccggtgccctcacagactactgtgatgtcgcag
cccatgcaccagccgcagcagcctcagcagccaagtgtggttatcgtcggcccgaaccct
cagcagaacccagcctacgcatcagccatccatcaaatcgtactctccaatcccacctcc
attccagccagtcaaacggtgcagttggctggacaagcaagcattacccaatctccttca
cagtcacctgggcttgcaaccagcagtcacgtgccacaaatcgtagcatctccaaacacc
atgcagatgcaagggcctccccccactgtcagccagatgttgtctgttaagaggcagcag
cagcaccatcacctccccccacagccacagatgcaagttcagcctcagcctgcacctcca
cctccaggtcaacctacctccactgaatctagtttgatcaaacagttgcttcttccaaag
cgaggcccatccactcctggaggcaaactgattctccctgctccccagttgcctccccca
aataattctagggctcagagtcctcaagtggtctaccaagtagcgaacaaccaaaaccca
ggttttggtgttcagggtcagccccaaacccagcagctactagtaggccagcagaatgtt
cagctggtccagagctctattcaatcacaagggactgtccaaactgtgcccatttccaat
ttacagattttacctggccagttgatctccactagtagtcctgcaaccatcatccaaggt
actgctggtaaccaggtaaccttcacagttgtgccaaataccagttttaccaccgctgct
gttagtcagggaagtggatcacagattattgctccggcaggaatctcagtaagcagctca
caacctggagttggccttcaagtacagaccattccaacgtctcaagttgggcaaacaagt
caatctcctacaccactgtttaaaggcgacaagatcatctgccagaaggaggaggaggcg
aaagatgcaactgggctacatgtacatgaacgcaaaattgaaataatggagaactcttcc
ctcccagaaggggctgccaaaaccagtaatggtgactcaaaggattgtgaaacgtctaca
gcaaatcttgttaatggaaaaagatacgttgactctagtctacctccgtctaactcaggg
aaaaaccagttggaggccagtcagtgcatgcaggtcacgaatgggcccctgtccgaagtc
aatgacaatcctgccaatgggatgcagtgtacggagcaggcagatacacaggaactaaaa
agtgacctgagaaagtccctggtgaacgggatctgtgactttgaaaaaggagatggttct
catttaagcaaaaacattccaaatcataaagcttccaaacatgtgggaaatggagagatc
tctccaccagaacagcaagagaattcagaccccactcggcaagatactgccaaagctgat
cactctgaaagaatgacaaatgggccagtagtaacgaataacgctctgcctattgcaaat
gcaccattggaggtataccgaaaggttagcagtaatagtgcagagttatcaaatggacct
gtacaatcaagtttaaaatcagatttgcctcagcagcagcatccatgcgtagtaatgtca
ttgcagtctacagcctcagtaacgataaccactgtaaatccattcacaacagtatcccag
tctggaactgcagtgcctcagtgtgtaccatcatttgagccttggtcttctaatggctca
aatgaaagccgaggtgtaaagagaccagcagaggatatggacagaggaactgtttcagga
atccccaataaagtaggggtgagaattgttacaattagtgaccccaacaatgctggctgt
agtgcaacaatggtagctgtgccagctggtgctgacccaagcactgtagctaaagcagca
atagaaaatgcagcccaacaaaaacagcaccaacctccctttgtacaagggctggtgaca
cagccttcgtgtatctcgtcaacaataactgtacaggcaccacaagtgagttccactaca
cctccatctgtaaccccaacttcatgtcagaattcagagcatgtaaggaagcctggacag
aacttcatgtgcttatggaaatcttgtaaaaggtggtttcagacaccgtctcaggtgttc
taccatgctgctacccaacacggaagcaaagacacatacccagggcagtgcttttgggaa
ggttgtgagcctttccctcgtcagagattgtccttcattactcatttacaggataagcac
tgctctagagaagctctacttgctggattaaaacaagaggagcaaatacaaactggaaat
cagaaaacttccaagcaacaggcagcagtaggtaacacttccagtcccagagcacagaaa
gctattgtaaatcatcccagtgctgctctcatggcactgcgacggggatctcgaaacctg
gttttcagagatttcacagatgaaaaagaaggacccataacaaaacacatccggctgaca
gctgccttaacattaaaaaatattgcgaaatattcagactgtggccgaaagttattgaaa
cggcatgaaaaccatctatccgtactagctctgagtaacatggaaacttccaccacactt
gccaaatgcctttatgaactcactcactcaaccgagtcctga
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