Polyodon spathula (Mississippi paddlefish): 121318133
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Entry
121318133 CDS
T07273
Name
(RefSeq) contactin-1-like isoform X1
KO
K06759
contactin 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121318133
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121318133
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
pspa00537
]
121318133
Cell adhesion molecules [BR:
pspa04515
]
Immunoglobulin superfamily
Contactins
121318133
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
pspa00537
]
Others
121318133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
V-set
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Big_3_4
DUF4998
Motif
Other DBs
NCBI-GeneID:
121318133
NCBI-ProteinID:
XP_041110394
LinkDB
All DBs
Position
7:complement(10146324..10242541)
Genome browser
AA seq
1014 aa
AA seq
DB search
MQPLTLYLVCLSFMLCHAEEGTGYGPVFEEEPIDTVYAEESPEGKVTMNCRARGNPAVVY
KWKLNGWDIHVLDTDDHYTMVGGNLIINNPEKSRDEGRYQCVAKNIYGSVVSRVVTIKFG
YVRDLDPFLTEERSAVSVKVGQGAVLLCAPPPHYPDDLSYRWLLNEFPIFITPDNRKFVS
QTTGNLYISNVDPADKGNYSCFVSSASIAKSVFSKFISLVPQDEREKVRKYPADIKVRFP
DTYTLVGQNVSLECFALGNPNPKIVWRKVDAPFPSNYEISLSGSVFTIFNIQVKDEGLYE
CEALNVKGKDRHQARVYTEAYPEWAKHINDTEKDIGSDLTLSCEAKGIPKPTIRWLKNGI
GYGKGDLKFYGLTLEDAGMYQCVAENKHGTIYANAELRVIASAPDFELNPVKKKLLGAKG
GRAVIECKPKAAPKPKFSWSKGTELLQNSTRIYIWEDGSLEILNVTVADEGRYTCFAEND
RGKANSTGTLSVTEATKITLAPSNADVTVGEKATMQCHATRDPSLDLTYIWSVNNHVLDF
DKEKEHYGRNLMSEDRGDLFIANAQLRHAGRYTCTAQTIVDNSSASADLVVRGPPGPPGG
VRVEEIRDSSVKLTWSRGTDNHSPISLYTIQARSMLWEDWKTVKTSPSNIEGNMEAANVI
DLIPWMEYEFRVIATNTLGTGEPSMPSRQIKTLEAAPTVAPSDIGGGGGSNRELTITWTP
VSREYYFGGNFGYIVAFKPHGDKEWRKVTVASPEARRYVHKDASITPSTEFQVKVKAYNN
KGEGPFSLTAVVYSAQDAPTEAPTGVTARSLSSSEAQVSWVPVVQHTIEGYEVRYWRTQD
KEEAAHRVQVSSHTNSTRLENTLPDAHYHIEVRAFNSAGYGPPSELCDIYTKKAPPSRPP
KIVSKYIVGSRVSIVWEHVEPLANESRVVGYKVLYRQEGKPGGTLYSTGKHYIDVPIPKD
GEYIVEVRAHSEGGDGAVAQVKITGELGGAVSVQSASVTSLLFLVLVAICCLEL
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgcaacccctgaccttataccttgtttgtttgtcatttatgttgtgccatgctgaggaa
ggtacgggatatggaccagtatttgaggaggagccaattgatacagtatatgcagaggag
tctcctgaaggaaaagtcactatgaactgcagagcacgaggaaacccagctgttgtatac
aagtggaaattaaatggctgggatatccatgtgttagacacagatgatcactacactatg
gtaggagggaacctgatcattaacaacccagagaaaagcagggatgaagggcggtaccag
tgtgtagcaaaaaatatatatggcagtgtggtcagcagagtggtcaccatcaagtttgga
tatgtacgagaccttgatccgtttttaacagaagaacgctctgcagtgtctgtgaaagtt
ggacaaggcgctgtgctgctctgtgcacctccaccacattacccagatgacttgtcatac
cgctggcttctgaacgagttccccatctttatcacgccggataatcgaaagtttgtatct
cagacaactggcaatctgtacatttcgaatgtggatccagcagataagggcaattactca
tgctttgtgtccagtgcatctattgcaaaaagcgtcttcagcaagttcatttcactggtt
ccccaggacgaacgtgagaaagtgagaaagtatccagcagacataaaagttcggttccca
gacacctatacactggttggacaaaacgtgtcacttgaatgttttgctcttggaaacccc
aatcccaaaattgtgtggagaaaagtcgatgcgccctttccaagcaactatgagatcagt
ttgtctggttccgttttcacaatatttaacatccaggttaaagatgagggcctgtatgaa
tgtgaagcactgaacgtgaaaggaaaagatagacaccaggcaagagtttataccgaggct
tacccagagtgggcaaaacatataaatgacactgaaaaagacattggaagtgatctgact
ttgtcatgtgaagccaaaggcattcctaaacctactatcagatggctgaaaaatggaatt
gggtatggtaagggtgatttgaaattctatggactgaccttggaggatgctggaatgtat
cagtgtgtagcagaaaacaagcatggaactatttatgcaaatgctgagttacgagtaatt
gccagtgcacctgattttgaattgaaccctgtgaaaaagaagcttctgggtgctaaaggt
ggtagagcggtaattgagtgcaaaccaaaagctgcccccaaacccaaattctcctggagt
aaagggactgaactgctgcaaaatagtacaaggatatatatttgggaggatgggagtctg
gaaatcctaaatgtcacagtagcggatgaaggaaggtatacatgctttgcagagaacgac
agagggaaggctaatagcacaggcaccctttctgttacagaagcgactaaaattactctt
gcaccttctaatgctgacgtgactgttggagaaaaggctaccatgcagtgccatgccact
cgggacccctcactggatcttacatatatctggtctgtgaacaaccacgtccttgacttt
gataaagagaaggagcactacggtcgaaatttgatgagtgaagacagaggggatttgttc
attgcaaatgcccagttacggcatgctgggaggtacacctgcacagctcagacaatagtg
gacaattcttcagcatccgcagacctggttgtgagaggaccaccaggacctccaggtggt
gttcgagtggaagagatcagagattcctcagtgaaattgacatggagccgtggaactgac
aatcacagccctatttccctatacaccatccaggccaggagtatgctgtgggaggactgg
aaaactgtcaaaacatctccttcaaacatcgaaggcaatatggaggcagcaaatgtaatt
gatttaattccctggatggagtatgaattccgtgtaatagcaacaaatacattagggaca
ggagagcctagcatgccgtcgagacaaattaagactctggaagcagctcccactgtggct
ccatctgatattggagggggtgggggaagcaaccgagagctaacaattacatggacgccg
gtgtcaagagagtactactttggtggtaattttggctacatagtggcctttaagccacac
ggtgataaggaatggaggaaggttacagtggcttctccagaagccaggcgttatgtacac
aaagatgcatctatcaccccgtccactgaattccaagtcaaagtcaaagcttacaacaac
aagggagagggtcccttcagtctaacagcggttgtttattcagcccaagacgctcctact
gaagcaccaacaggtgtaacagctcggagcttgtcatcctctgaagcccaggtctcttgg
gtgcctgttgtccagcacacaatagaggggtatgaggttcgatactggaggacacaagac
aaagaagaagctgcacatcgagtacaagtatccagtcacactaattcaaccagactggaa
aatacacttccagatgcacattaccacatagaggtccgagcctttaactctgctggatat
gggcctcccagtgagctctgtgatatctacacaaagaaagcacctcctagccgccctcca
aaaatagtcagtaaatatattgtcggttcccgagtgagcatcgtctgggagcatgttgaa
cctttggctaatgaatccagagtggttggatacaaggtgctgtacagacaagaaggaaag
ccaggaggaacgttgtattcaaccggtaaacactatatagatgtaccaattccaaaagat
ggcgagtatattgttgaagttcgtgcacatagtgaaggaggagacggagcagtggctcaa
gtcaaaatcacgggtgaactcggaggagccgtcagtgtacagtctgccagtgtcaccagt
ttgctgtttttggtcctggttgctatttgttgcctggagctgtga
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