Polyodon spathula (Mississippi paddlefish): 121318222
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Entry
121318222 CDS
T07273
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator-like isoform X1
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa02010
ABC transporters
pspa04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121318222
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121318222
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pspa02000
]
121318222
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
121318222
Transporters [BR:
pspa02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
121318222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
CFTR_R
ABC_tran
AAA_29
AAA_21
SMC_N
DUF87
nSTAND3
AAA_23
FtsK_SpoIIIE
T2SSE
MMR_HSR1
AAA_16
MeaB
RsgA_GTPase
nSTAND1
DO-GTPase2
Zeta_toxin
NTPase_1
AAA_30
Motif
Other DBs
NCBI-GeneID:
121318222
NCBI-ProteinID:
XP_041110603
LinkDB
All DBs
Position
7:complement(14935709..14974170)
Genome browser
AA seq
1467 aa
AA seq
DB search
MQRSPLENANFFSKLLFCWPSAILRKGYRQRLEISDIYKVSSCDSADTLSEKLEREWDRE
LATSKKNPSLFKAIRRCFFWQFVFYGILLYLGEASKSVQPQLLGRIIASYDPAHEEERQM
GFYLAFGLSLLFIARMFLLHPAIFGLHHLGMQIRIALFSLIYKKTLKLSSRVLDTISTGQ
LISLMSNNLNKFDEGLALAHFIWIAPLQCILLMGFIWELVGASAFSALAALTLLAIIQAC
LSQRIEHYRTLRAGKISERLVITSEVIENLHSVKAYGWEEAMEKIIDAIRQAEVKLTRKT
AYLRYFNSAAFFFSAFLAVIVSVVPFALSHGIILRRIFTTLSYCMILRMTITRQFPGSVQ
MWYDSLRVIQKIEDFLKKDEYKALDYNLSATEVEMVNVTASWDEAIGELFEKVKQQSDIP
NGEDGLFFSNYSLYITPVLRNISLHLEKGKMLAVAGSTGSGKSSLLMMIMGELEPSEGFT
KHSGRISFSPQMSWIIPGTIKENIIFGLSYDKYRYTSVVKACQLEEDLALLPEKDGTVLG
DGGVTLSGGQRARISLARAVYKDADLYLLDSPFSHLDILTEKDIFERCICTLMANKTRIL
VTSKLEHLKKADKILLLHNGQCYFYGTFTELQSQKPDFSSLLMGLQAYDNFNSERRTSIL
TETLRRCSVDSEAGFRADPVRQSLKQPGAELNEKRKSSLIINPLTAGRKFSSVGEDTLSE
AGERKLSFVPDSEPGEGGIPRSNLLNTDPTIRGQRRQSVLAFMTGAQKQGHQARRNTTFQ
QRMSIAPQSSLATELDIYARRLSKDSSFDVSEDINEEDLKECFIEDHEGRNERTAWSTYL
RYTTSNRNLVLVLIFILVVFIIEVGGSLFGIYVVNEWIQQNETVGNASDPVHQAVIVTRT
SAYYIIYIYVATAESLLALGFFRGLPLVHTLITVSKSLHKKMLKSVLRAQMSVLNTMKTG
RIINRFTKDIAVIDDMLPLVIFDVVQLVLIVMGAMLVVSVMEPYVFLAAIPVIVAFVMLR
AYFLRTSQQLKQLESEARSPIFSHLIISLKGLWSIRAFGRQAYFETLFHKALNVHTANWF
LYLSTLRWFQMRIDMIFVIFFIIVAFVSVGTNGSGEGKVGIIITLAMNIMSTLQWAVNSS
ITMDSLMHSVSRIFKFIDLPQEAPKICDKQKSSMPESLVIENPHTGQEWPSAGQMTVSNL
TAKYTEGGRTILENLSFSVNAGHRLGILGRTGSGKSTLLAALLRLVSANGDITIDGVSWN
SITLQEWRKAFGVLPQKVFIFSGTFRKNLDPHGKWSDEELWRVTEEVGLKSVIEQFPDKL
DFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPITFQIIRKTLKHTFANC
TVMLSEHRLEAMLECQSFLVIEGSSVKPYDTIQRLLNESSLLKQAISSAERMKLFPLHRR
NSSKRKPRPKITALQEEAEEDVQDTRL
NT seq
4404 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggtcgcctctagaaaatgccaacttcttctctaaacttttattctgctggcca
tcagcaattttaagaaaaggatacaggcagagattagaaatatcagatatatacaaggtg
tcatcttgtgattctgcagacacgctgtcagagaaattagaaagagaatgggacagagag
cttgcaacatcaaagaaaaaccctagtctcttcaaagcaatccgacgatgctttttctgg
caatttgtcttttatggaatcctcctataccttggggaagcatcaaaatctgtacagccc
cagctcctgggaagaataatagcttcttatgatccagctcatgaagaggaacggcagatg
ggattctacctggccttcggcctctccttacttttcattgcaaggatgttcctgctgcat
cctgccatctttggtcttcatcatctgggaatgcagatcagaatagctttgtttagctta
atttacaaaaagactctaaagctgtccagtagagtcctagatacaattagcaccggtcag
ctaattagcctgatgtctaacaatctcaacaagtttgatgagggtcttgcattggcacac
tttatttggattgcaccactgcagtgtattctgctgatgggatttatctgggagctggtt
ggggcctctgcattttctgcactggcagctctgactcttcttgccattatccaagcctgt
ctttcccaaaggattgagcactacagaactctgagggcaggaaaaatcagtgaaaggctg
gtaattacatcagaagttattgaaaacctccattcagtaaaagcttatggctgggaggag
gctatggaaaaaatcattgatgccatcagacaggctgaggtgaagctcaccagaaagact
gcttacctcagatacttcaacagtgcagcctttttcttctctgcctttctcgcagtcatt
gtgtctgtggtgccctttgctctcagtcatggaataatccttcgcagaatattcaccacc
ttgtcctactgcatgatcctccgaatgactatcaccaggcagtttcctgggtctgtgcaa
atgtggtatgattccctgagagttatccagaagattgaggactttcttaaaaaagatgag
tataaagcactggattacaatctttcagcaacagaagttgaaatggtgaatgtaacagca
tcttgggatgaggctataggagagctgtttgaaaaagtaaagcaacaaagtgacattccc
aatggagaggatggcctgttcttcagcaactactccctgtacataacacctgtcctgaga
aacatcagcttgcatttggaaaaggggaagatgttggcagtagctggatcaacaggctca
ggcaagagctctcttctgatgatgatcatgggagaactggagccgtcggagggatttacg
aagcacagcggccgcatctccttctcccctcagatgtcatggatcatacctggaaccatt
aaagagaacattatatttggtctctcatatgacaaatacagatataccagtgttgtcaag
gcttgccaacttgaagaggaccttgcactgctcccagagaaagatggcactgtgcttgga
gacggtggggtcacattaagtggtggacagcgtgccaggatctccttggccagagccgtg
tataaagacgctgatctatatctattggattcaccttttagccatctggacatcctgacc
gagaaggacatatttgaaagatgcatttgcactctgatggccaacaaaactcgtattctg
gtcacatcaaagctggagcacctaaaaaaggctgacaagatcttgctgctgcacaatggc
cagtgctatttctatggtaccttcactgagctacaaagccagaagccggacttcagctcg
ctgctcatgggcttgcaggcctacgacaatttcaattcagaaagaagaacctccatcctg
acagaaacccttcgccgttgctcagtcgacagcgaagcaggcttccgtgctgatcctgtg
aggcagtcacttaaacaaccaggggcagaattaaatgagaagaggaagtcatctctcatt
attaatcctcttactgctggcaggaagttctcaagtgtaggagaggacactttgagtgag
gccggggaacgaaagctgtctttcgtcccggactctgagccgggagaaggggggatacca
aggagtaacttactaaacacagatccaaccattcgtggacagaggcgacagtcagtgctg
gcctttatgactggcgctcagaaacaagggcaccaagctcggcgaaacactacatttcag
caaagaatgtccattgctccccagagctcacttgctacagagctggacatttatgcaaga
cgcttatctaaagacagcagctttgatgtgagcgaagacatcaacgaagaagatttaaag
gaatgttttattgaagatcatgaaggccgcaatgagaggaccgcatggagcacttacctt
cgatacaccacatctaatagaaaccttgttttggttcttatctttatcctagttgtattt
ataattgaggttggaggttccttgtttggaatatatgtggtcaatgaatggatccagcaa
aatgaaactgtaggaaatgcatctgatccagtacaccaagcagtgatagttaccagaacc
agtgcttactatatcatttacatttatgtggcaactgctgaaagcctgctggcactcgga
ttctttagagggcttcctttggttcacactctgataaccgtctcgaagagtctgcacaag
aagatgcttaaatcagttttacgagctcaaatgtctgtcttaaatacaatgaagacaggt
cgaattataaaccggttcacaaaagatattgctgtcatcgatgatatgctgcctcttgtt
atattcgacgttgtgcagttggtgctgattgtaatgggagccatgcttgtggtctcggta
atggagccctacgtcttcctggctgccatccctgttattgtagcttttgtcatgttgcgg
gcctactttctccgtacatcacagcagctgaaacaacttgaatctgaggctcgtagtcca
attttttcccatctcataatatctctaaagggactctggtcgatccgtgcttttggaaga
caggcttattttgaaacccttttccacaaggcattgaacgttcatactgccaactggttc
ctttacttgtccacactgcgctggttccagatgaggattgatatgatatttgtcatcttc
tttattattgttgccttcgtttctgttggaacaaacggcagtggggaaggaaaagttgga
ataattataacattagccatgaatattatgagtaccttacagtgggcagtgaactccagc
attactatggacagtctgatgcactccgtgagcaggatattcaaattcattgacttgcct
caagaagcacctaaaatctgtgacaagcagaaaagcagcatgcctgaaagcctggttatt
gagaacccacacacgggtcaggaatggccgtctgcaggccaaatgactgtcagcaaccta
acagcaaagtacacagaaggaggccgaactatccttgaaaacctctcattttcagtaaac
gctggacataggctgggcattctgggaagaactggttcaggaaagagcacattactggct
gcattgttacggctggtgtcagcaaacggggacatcacgattgatggggtctcgtggaat
tcaatcactttgcaggaatggagaaaagcatttggtgttctcccacagaaagtatttata
ttctctgggacattccgtaagaatctggacccccatgggaaatggagcgatgaagagcta
tggagagttaccgaagaggtcggcctgaagtctgtcattgagcagtttccagataaactg
gatttcgttctggtggatggaggctatgtccttagtaatggtcataaacagttgatgtgc
ctggccaggtcaatcctgagtaaagccaaaatcctgcttctggatgaacccagtgcacac
ctggaccccataacctttcagattataaggaagacactaaagcatacttttgccaactgc
actgtcatgctatcagaacacagactagaagccatgcttgagtgtcagtcttttctggtg
atcgaaggcagttcagtgaaaccgtatgataccattcagaggctcttgaatgaatctagt
ctgttgaagcaggcaataagcagtgccgagcgtatgaagcttttccctctgcatcgccgg
aactccagcaagcgtaagccacggccaaagatcactgctttacaagaggaggccgaggag
gatgtacaagacacaagactgtaa
DBGET
integrated database retrieval system
