Polyodon spathula (Mississippi paddlefish): 121318327
Help
Entry
121318327 CDS
T07273
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121318327
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121318327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Alanine_zipper
Motif
Other DBs
NCBI-GeneID:
121318327
NCBI-ProteinID:
XP_041110789
LinkDB
All DBs
Position
7:complement(20162641..20188410)
Genome browser
AA seq
1782 aa
AA seq
DB search
MWILQVATILVVWVHALAQGPQLSYGCAEGSCYPATGDLLIGRADRLSSTSTCGLLKPEP
FCIVSHLQEEKKCFVCDSKERYDENVNHTTSHGIENVVTTFAHNRLKTWWQSENGLENVT
IQLDLEAEFHFTHLIMTFKTFRPAAMLIERSSDFGRAWQVYRYYAYDCESSFPGISVGPM
KKVNDVICDSRYSDIEPSTEGEVIFRVLDPAFRIEDPYSPSIQNMLKITNLRINLTRLHT
LGDNLLDSRMEIKEKYYYAIYDMVVRGNCFCYGHASECAPVDGTGEDVEGMVHGHCMCRH
HTKGLNCEQCEDFYHDLPWRPAEGRNSNACKKCNCNEHSFTCHFDMAVYLSTGNVSGGVC
DSCEHNTMGHSCEQCKPFFYQHPERAIRDPNICEQCNCDPVGSHNGGICDRYTDFSTGLI
AGQCRCKPNVEGERCDQCKEGFYGLSDDPLGCQPCTCNPLGTLPGGNPCSAETGNCYCKR
LVTGRNCEQCLPQHWGLSNDLDGCRSCDCDHGGALNNNCSAETGQCECREHMFGRQCTEV
ESGFYFIALDHYTYEAEDANFGPGVSVVQRTYPQDRTPTWTGIGFVNVPEGAYLEFYIDN
IPTSMEYDILIRYEPQLPDKWEEAIITVIRPDIISTSSRCVNTVPDDDNQVVSLPPGSRY
VVLPRPVCFEQGLNYTVRLHLPLYSHLSDVQSPYTLIDSIVLMPHCKTLEMFTGGSREDV
DTNSAWETFQRYRCLENSQSVVETPMTDICRNIIFSISALLHQGALSCQCDPQGSLSTVC
NPSGGQCQCRPNVVGRNCDKCAPATYLFGPSGCRSCECNPQGSYNSFCHVETGQCQCIPG
AYGRQCEKCLPGYWGFPSCRPCNCNGHTDQCDPQTGECVGCKDQTTGRNCERCLTGYYGD
PILGSGDHCRPCLCPDGPNSGRQFASSCSQNQYSLQVSCACNEGYAGARCDDCAPGYYGN
PEEVGGVCQPCQCNNNIDMLDSGSCDVRTGICLKCLYNTEGGSCEQCKLGYYGDARTQSC
RKCVCNYLGTVNDTCPSSSECHCDLNNGQCQCLPNVIGQNCDQCATDTWNLASGSGCEDC
DCDETRSFGSSCNELTGQCACKPGFGGRACNNCQELFWGDPAEECKACDCEPSGIRTPQC
DRTDGNCICEEGIAGPRCDKCARGYSGVFPDCVQCHQCFAEWDVIIGDLTNKTRNLVKKV
NSIKASGITGPYQDTVNAIEQRASDIRSLLAQNPAAQPLGDIQNLLEEAEKLITEVNKNV
QNVELELAATLANNSNANTELDDLQKESQNLNKVVNDLAEQLEFVKNSDVQGALDSVNKY
FQQSMDAESRVNTSTTDPDNTVEQSSAIRQQVEDLMNESRIQFEENQENYTKHLDDLAAQ
LQTLDLSEVNEKTCGSSSGASCTEGQCGGLSCRDEDGTKKCGGEGCDGLVTLSHNAWKKA
VDFDTEILNALAEVDQLSKIVSEAKLKADEAKLNAQGVLQKTNSTKQKVDKSNEDLRNLI
KQIREFLTQDGADLESIEAVANEVLKMQMPTTPQQLQELTDDIRERVESLSDVEIILNQS
AEDIHRAETLLGEARKASKEATDLKNTADMVKEALSEAEKAQNAAEKAIKQADVDIRGTQ
DLLTSIESETAASESRLNNATQRLAQLEKDIGDLKQKASDNTDMAEEIEKSADKVKHDAE
EAKRELDDELKNKYDVVEVLIVQKSEGVADARKRAEALQNEAKQLLSHAGGRLQELKDLE
KTYEDNQKTLEDKAKVLVELEEAVRLLLQIISQKVAVYSTCL
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atgtggatactccaagttgctacgattctagttgtctgggtgcacgcccttgcccaggga
ccccagttaagttacggctgtgcggagggaagttgctacccggccacgggtgacttattg
atcggaagagcggaccggctttcttccacctccacctgtggattgttaaaacctgaaccc
ttttgcattgttagccatctgcaggaagagaagaaatgctttgtttgtgattccaaggaa
cggtatgatgagaatgtaaaccacacaaccagccatggcattgagaacgttgtaacaaca
tttgcacataaccgcttaaaaacctggtggcagtctgaaaatggtttggaaaatgttacc
atccagctggatctggaggcggaattccatttcactcatctcattatgacgttcaagaca
tttcgtccagctgccatgttgattgagcgctcttctgatttcgggagggcctggcaggtg
taccgttattatgcatatgactgcgaatcatcattccccggtatttctgtggggccaatg
aagaaagtaaatgatgtcatctgtgactcccgctattcggacatcgaaccatctacagaa
ggagaggttatctttcgagtcttggatcctgcttttagaattgaagacccttacagcccc
agtatccagaatatgttaaaaatcactaacctgcgaatcaatcttacaagactacacacc
ctgggagataacttgctggactcaaggatggaaatcaaagaaaaatactattatgccatc
tatgacatggtagtccgtggtaattgtttctgttatgggcatgcaagtgagtgtgctcct
gtagatggaactggagaagatgttgaaggaatggtacacgggcattgcatgtgcagacac
cacaccaaaggtttgaactgtgagcaatgtgaggatttctaccatgatctaccctggagg
ccagctgagggacgcaacagcaatgcttgtaaaaaatgtaattgcaatgaacactcattc
acctgtcactttgatatggctgtgtacttgtccacgggaaacgtcagcggaggggtatgt
gacagttgtgagcacaacactatgggacacagctgtgaacagtgcaagcctttcttttac
caacatccagagagagctatccgtgaccccaacatctgtgaacaatgtaactgtgaccca
gttggttcccacaatggtggaatctgcgatcgctacactgacttctctactggtctcatt
gcgggacaatgccgctgcaaaccaaatgttgagggcgagcgttgtgatcaatgtaaagaa
gggttctatgggttaagtgatgatcccttggggtgtcagccttgtacatgcaatcctttg
ggaacgcttcctggaggaaatccatgcagtgcagagacaggaaactgttactgcaaacgc
ttggtaactgggaggaactgtgaacagtgtctgcctcaacactggggactgagcaatgat
ctggatggatgcaggtcttgtgactgtgaccatggtggagcactcaacaacaactgttct
gcagaaacgggacagtgtgaatgtagggaacatatgttcggacgccagtgcactgaagtt
gaatctgggttttactttattgcgctcgatcattatacgtacgaggcagaggatgccaac
tttggcccaggagtgagcgtagtccagagaacatatcctcaagatcggacaccaacttgg
acaggaatcgggtttgtgaatgttccagaaggagcctatctggaattctatattgacaac
attcccacttcaatggagtatgatattctaatacgctatgaacctcagttaccagataag
tgggaagaagccataataactgttattcgcccagacatcatttctaccagcagcagatgt
gtgaatacagtgcctgatgatgacaaccaggtggtatctctgcctccaggttccagatat
gtagtcctgccacgccctgtgtgttttgagcagggactgaattatactgtccgcctgcat
ctgccactttactcccatctgagtgatgtccaatccccatacacgttgattgattctatt
gtactcatgcctcattgcaaaacgttagaaatgtttaccggtggttcaagggaggatgtt
gatacaaacagtgcttgggaaaccttccagagataccgctgcctggaaaacagtcaaagc
gtggtggaaacaccaatgactgacatctgcagaaacatcatctttagtatttctgcactg
cttcatcaaggagcgttgtcctgtcagtgtgatcctcaagggtctcttagcacagtgtgc
aaccccagtggagggcagtgccagtgtaggcctaatgtggttgggagaaactgtgacaaa
tgtgctcctgcgacctacttgtttggacccagtggctgtagatcctgtgaatgtaacccc
cagggctcttataattcattctgccatgttgagactggacagtgccagtgtatccctgga
gcctatggacgtcagtgtgagaagtgtctgccaggatactggggatttcctagctgtcgt
ccctgcaattgcaatggacataccgaccagtgcgacccccagactggagagtgtgtgggc
tgtaaggatcaaaccacaggccgcaactgtgagaggtgtttaacaggttactatggcgat
ccaattcttgggtcgggtgatcactgtcggccttgtctttgtccagatggccccaacagt
ggacgccaatttgctagcagttgttcccagaaccaatattctctccaagtttcttgtgca
tgcaacgaaggatatgcaggtgccagatgtgatgactgtgctccaggttattatgggaac
ccagaggaagtaggaggagtgtgtcagccgtgccaatgtaacaacaatattgacatgctg
gattcgggttcctgtgatgtacgcactggaatttgtctgaaatgcctctacaacactgag
ggtggaagctgtgagcaatgcaagcttggctactatggagatgctcggacacaaagctgc
agaaagtgtgtttgtaactacctgggtacagtgaatgatacctgcccctcttcaagtgag
tgccactgtgacctcaacaatggtcagtgccagtgtctcccgaatgtgattggacagaat
tgtgatcaatgtgctacagacacttggaatctggccagtgggagtgggtgtgaggattgt
gactgtgatgaaacacgttcctttggatcatcttgcaatgagttaacaggtcagtgtgca
tgcaagcctggatttggaggtcgtgcttgcaacaactgccaggagcttttttggggagat
cctgctgaggaatgcaaagcttgtgactgtgaacccagtggcatccggacaccccagtgt
gaccgcactgatgggaactgtatctgcgaagaaggaatagcaggtccacgttgtgataaa
tgcgctagaggctattctggcgttttccccgactgcgtgcaatgccatcagtgctttgct
gagtgggatgttattattggagacctaaccaataagactcgcaaccttgtgaagaaggtg
aactccatcaaagcaagtggcattactggaccgtaccaagacacagtaaatgcaatcgag
caaagggccagtgatatcagaagtcttctagctcagaatcctgccgcccagcctctcggt
gacattcagaatctcctggaagaggcagagaaactgatcacagaggttaacaaaaatgta
caaaatgtagaactggaacttgctgccacattagccaataacagcaatgcaaacactgag
ctagacgaccttcagaaagaatctcagaatttgaacaaagtggttaatgacttggcagag
cagctggaatttgtcaagaattctgatgtccaaggcgctttagacagtgtcaacaagtat
tttcagcagtctatggacgctgaatcacgggtaaatacttccactactgacccagataac
acagtagaacaatcctctgccattcgccagcaagtggaagacttaatgaatgagtctcgt
atccagtttgaggaaaaccaagagaattatacaaaacatttagatgatcttgctgctcag
ctgcaaaccctagacctgtctgaagtcaatgaaaagacttgtggaagttcttctggagcc
tcttgtactgaaggacagtgtgggggtttaagctgtcgtgatgaagatggaaccaagaaa
tgtggaggcgagggctgtgatggtcttgttactttgtctcacaatgcttggaagaaagct
gtggactttgacacagaaattctcaatgccctggcagaggtggaccaactgtctaaaata
gtttctgaggcgaaactgaaggctgatgaagccaagctaaatgcacagggagttctccag
aaaacaaactcaaccaaacagaaagtggataaaagcaacgaagacctgagaaatttaatc
aagcaaatccgcgagttcttgacacaggatggtgcggatctcgaaagcattgaggctgtt
gctaatgaagtgttgaaaatgcagatgcctacaaccccgcaacagcttcaagaattaact
gatgacatccgggagcgagtggaaagtttgtctgatgtggagataatcttgaaccagagt
gctgaagatattcacagagctgagactctgcttggtgaagccagaaaagcaagtaaagaa
gcaacagatcttaagaatacagctgacatggtaaaggaagccctttcagaagctgaaaaa
gcccagaatgctgcagagaaagcaattaagcaggctgatgttgacatcagagggactcag
gacctgttgacctcgattgaatcagagactgcagcttcagagagcagactaaacaatgca
acccaaagacttgctcagctggagaaggatattggtgatctaaaacagaaggcatctgac
aacacagacatggctgaagagattgagaaatcggcagataaagttaagcatgatgcagag
gaagctaaaagggaattggatgatgaactgaagaacaagtatgatgttgtggaagttcta
atagtccaaaaatcagaaggtgtggctgatgcgaggaagagggcagaggcactacagaat
gaagcaaaacaactgctatcacatgctggcggcagacttcaggagctaaaagatttagag
aaaacatacgaagataaccagaaaaccttagaagataaagcaaaggttttagttgagcta
gaggaggcagtacgcttacttttgcagattatcagccagaaagttgctgtttatagcacc
tgcttgtaa
DBGET
integrated database retrieval system
