Polyodon spathula (Mississippi paddlefish): 121318354
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Entry
121318354 CDS
T07273
Name
(RefSeq) nipped-B-like protein isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
121318354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121318354
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
121318354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
HEAT_EZ
HEAT
Cnd1
Cnd3
MIF4G
Motif
Other DBs
NCBI-GeneID:
121318354
NCBI-ProteinID:
XP_041110856
LinkDB
All DBs
Position
1:38284442..38346717
Genome browser
AA seq
2806 aa
AA seq
DB search
MNGDMPHVPITTLAGIASLTDLLNQLPLPSPLPATTTKSLLYNGRIAEEVNCLLACRDEN
LVSQLAHSLNQVSTDHIELKDNLGSDDPEGDIPVLLQTVLTRNPNVFREKSMQNRYGVQG
GIMQQPMMPQYKMSQNSMHGSPASSNYQQTTISHSPSSRFVPPQTTSANRFMPQQNSPVP
SPYTPQSPPGYMQYPHPPSYTQHQQIQQELHGSPLVSAPTYSGSPQRPVQPCLIVQTQPS
PQQNPSTPALVSVASPMVAGSMRNIHENKVSGQVSSNSANHHADNSRHGSNEDYLHMVHR
IGNEEADPSMRNASFTLRSPQSVCSPAGSDGTPKAGSRPPLILQSPPPYASPRDGPPDIL
LDSPDRKKKQKKMKMSKEEKEQADKAAMYDIISSPSKDSTKLTLRLSRVKSTEMDPQEDL
LPDMEIGTDPESDLAYNNMPYVGQPPKPPVAPQDLHRSLNVAAQCLSQNEQAAFLQAQQV
PVLQQNTSVVSAKQPQPPTLQPQGAPPQQGATQPLSVTPYDEVEMDALAEIERIERESAI
ERERCSKEVQDKDKPLKKRKQDSYPQEPGAGGTAGATGASVGGGCSAGNKAAPQEASAAG
NGSSRPALMVSIDLQQAGRTDSQGLPDPSLPDPTLPAPVDEGQKQTEDPRGLSIAVVAAP
GEGSISTRQEDTAGVLKPKPENRPETPRRKSDGEVQKASDGRLEVIKHRPETPKQKGGES
KPETPKHKGESRPETPKQKGEGRPETPKHRHDHRRDSSAKPPSSEKRPEVSKHRQDGKTD
SIKVETGGRGSEMPRQRPDGRLASSSTSENPRRDQDGHKQRSEDRSDAERHRGDPSRIRR
PDTPKSSSRGEYDSKHGIKSEGSRDRERDRDREKKHRPESGESRERPDSPRVKQELRGDS
SSKSRPDRPGFKSPSSKEERRSDGSKNRPDGHKQQQQLDSKPDFPSYLLGGKSGALKNFV
IPKIKRDKDGNVTQDLKRTQSREENKIKVEKMSLVEDLNKGSKPVVVLQKLTFDEVQKFI
KEKEDRNARSSSKSGKNRPSLKSGKGGIDQSVLKDLPPELLAEIESTMPLCERVKMNKRK
RATVNEKPKYAEVSSDDDSNSEEAFESARKKHKKDRDKAWESEEPRERRGSGDHRKSSHS
HEGRRSSGSRYRERSPEDSESDTPPPSLSDIAKRLKKKEKQKKRKAYEPKLTPEEMMDSS
TFKRFSASVDNILENLEDMDFTALADDDEIPQELLLGKHQLNELGSESAKIKAMGITCRL
PSEKLVKVLNILEKNIQDGAKLSTLFNHDNDTEEEERLWRDLIMERVTKSADACLTALNI
MTSTHMPKAVYIEDVIERVLQYTKFHLQNTLYPQYDPVYRVDHGGGLLSSKAKRAKCSTH
KQRAIVMLYNKVCDIVSNMSELLEIQLLTDTTILQVSSMGITPFFVEGVSELQLCAIKLV
TAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDTDGEPMYIQMVTALVLQLI
QCVVHLPSDKDADDEYDKKVDQDVLITNSYETAMRTAQNFLSVFLKKCGSKQGEEDYRPL
FENFVQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKQTEMALRVASLDYLGTVAARLR
KDAVTSKMDQSTIDRILKESPGTDEIQQLQKALLDYLDINAETDPSLAFSRKFYIAQWFR
DTTTETEKAMRSQNQKDEDSSEGAHHARDIETTGDIMQKAEARKKCLRSIIKTTPSKFST
LKMNSDSVDYEDSCLIVRYLASMRPFAQSFDIYLTQILRVLGENAIAVRTKAMKCLSEVV
AVDPSILARLDMQRGVHGRLMDNSTSVREAAVELLGRFVLSRPQLTEQYYDMLIERILDT
GISVRKRVIKILRDICLEQPTFSKVTEMCVKMIRRVNDEEGIKKLVNETFQKLWFTPTPS
HDKDAMTRKILNITDVVAACKDTGYDWFEQLLQNLLKSEEDASYKPAKKACVQLVDNLVE
HILKYEESLADSENKSVNSNRLVACITTLYLFSKIRAQLMVKHAMTMQPYLTTKCNTQSD
FLVICNVAKILELVVPLMEHPSETFLATIEEDLMKLIIKYGMTVVQHCVSCLGAVVNKVT
HNYKFVWACFNRYYGAITKLKTQNQEDPNSTILAANKPALLRSLFTVGALCRHFDFDQEE
FKGNTKVVIKEKVLELLLYFTKHADEEVQTKAIIGLGFSFIQHPSLMFEQDVKTLYNGIL
SDKNGSVNLKIQVLKNLQTYLQEEDTRMQAADREWKKLSKQEDLKEMGDISSGMSSSIMQ
LYLKQVLEAFFHTQSNVRHFALNVIALTLNQGLIHPVQCVPYLIAMGTDPEPTMRNKSDQ
QLIEIDKKYTGFIHMKAVAGIKMSYQVQQAIWAAHNTIIRGFRQDEQNTALCSHLFTMVR
GNRQHRRAFLISLLNLFDDSAKTDVNMLLYIADNLACFPFQTQEEPLFVMHHIDITLSVS
GSNLLQSFRESLLKEAKPKEQKYCSEEEEEDEEQTSDSEDEAVRRPKKSCRRIDSDSESD
SDTENEDKVMRRLPDNPTPLIEFANASQGILLLLVLKQHLKNLYGFSDSKIQKYSPTESA
KVYDKAVNRKSSVHFNPRQTLEFLLNDMANAALTNEVKRKIVRQYLDFKLLMEHLDPDEE
DEEGEASANARNKAINALLGGASPKNNAADTEDDESDGDEKGGASGSRKSKRGGESAEVA
GHLNETVEAMDVIAICCPKYKDRPQIARVIQKTSNGYSVHWMAGSYSGVWAEAKKRDGRK
LVPWVDTVKESDIIYKKIALTSAHKLTNKVVQTLRSLYNAKDGTSS
NT seq
8421 nt
NT seq
+upstream
nt +downstream
nt
atgaatggggatatgcctcatgttcccatcaccactctcgctgggattgctagcctcaca
gacttattgaaccagctccctctcccgtctcctctgcctgccaccaccaccaagagcctg
ctgtacaatgggaggattgcagaagaggtcaactgtctcctggcctgtcgggatgagaac
ctggtgtcccagctcgcacacagcctcaaccaggtctccacggaccacatagagttgaag
gataaccttggcagtgatgatccagagggggatatcccagttctgctgcagaccgtcttg
accaggaaccccaatgttttcagggagaaaagtatgcagaatcgatacggggttcagggc
ggtattatgcagcagccaatgatgccacaatacaaaatgtctcagaattccatgcatggc
agccctgcatcttcaaactaccagcaaaccactatctcacacagtccttccagccggttt
gtaccaccacagacaacatctgcaaacagatttatgcctcaacaaaatagccctgtgccc
agcccttacacccctcaaagccctccgggatatatgcaatatccacaccccccaagttac
actcaacaccaacagatacagcaagaattacatggctcccctcttgtatctgcacctaca
tattcaggaagccctcagaggccagtgcagccctgtcttatagtgcagactcagccctct
ccacagcagaatccgtctaccccagcattagtttcagtagccagccccatggttgctggc
agcatgaggaacattcatgagaacaaggtgtctggccaggtgtcaagtaattctgctaat
caccacgcagataattccaggcatgggtcaaatgaagactacctacacatggtgcacaga
atagggaatgaggaagctgatccctccatgagaaatgcttccttcactctaagatctccc
cagtctgtgtgctctcctgcaggcagtgacggaactccaaaagcaggatccaggccaccc
cttatcttacagtctccacccccatatgcttcgcctagagatggcccaccagacatccta
ctagactctccagacagaaagaaaaagcagaagaaaatgaaaatgagcaaagaagaaaaa
gagcaggcggataaggctgcaatgtacgacataattagctctccgtctaaagactcaaca
aagcttacgttaagactttcacgtgtgaaatcaacagaaatggacccacaggaagatttg
cttcctgacatggaaattggtactgatcctgagagtgacttggcatataacaacatgcct
tacgtgggccagccccccaaaccgccagtagctccccaggatttgcaccggtccctcaat
gttgctgcacagtgtctgtcacagaatgagcaggctgccttcctgcaggcacagcaggtg
cctgttttacagcagaacacttcggtggtatcagccaaacagccacagcctcccacactg
caaccccaaggtgctcctccacagcagggagccacgcagcccctgtcagtgaccccctac
gatgaggtggaaatggacgctttggcagagatcgagaggatagagcgggagtcagccatc
gagagagagcgctgttcaaaagaagtgcaggataaagacaaacctttaaagaaacggaaa
caggactcttacccacaggagcctggagctggaggcactgctggtgctacaggtgccagt
gttggaggaggatgcagtgctggtaacaaagctgctcctcaggaggctagcgcagcaggg
aatggttctagcagaccagccctgatggtgagcatcgacctccagcaggcggggcggact
gactcgcagggtctcccagaccccagtctcccagatcccactctccctgctcctgtagac
gagggacagaaacagactgaagacccccgagggttgtccattgctgttgttgctgctcct
ggggaaggttccatcagcactcgacaagaagacacagctggcgtcctcaagcccaaacct
gagaaccgccccgagactcccaggaggaaatcagatggtgaggttcagaaagcatccgat
gggcggcttgaggtcattaaacacaggcctgagacccccaagcagaaaggaggagaaagt
aaacctgagactcccaagcataaaggtgaaagcagaccagagacccccaagcagaaagga
gagggccgaccggagacccccaaacacagacacgaccacagacgggactcctctgctaaa
cctcccagttctgagaaaaggccagaggtctccaaacatagacaggacggcaaaactgac
tctatcaaggttgaaactggaggacggggatcagagatgcccaggcagagacctgatggg
cgtctggcctcctcttctacttcagagaatcccagacgagaccaggatggccacaagcag
agatcagaggaccgtagtgatgcggagaggcacagaggagacccctccaggataaggcgg
cctgacaccccaaagtcctccagcaggggcgagtatgactccaaacatggcatcaaatca
gaaggctcccgggacagggagagagacagagacagagaaaagaaacacaggcccgaatca
ggtgagtccagggagaggcctgatagccctcgggtgaaacaagagctccggggggactcc
agcagcaaatctcggcctgacagacctgggttcaaatcccccagcagcaaggaggaacgg
cggtcagacggaagcaaaaacagaccggatggccacaagcagcagcagcagcttgacagc
aagccagattttcccagctacctgctaggtggcaagtctggggcactgaaaaactttgta
attcccaaaatcaaacgggacaaggatggtaatgtcactcaggatttgaaaaggacacag
tcaagagaagagaataagataaaggtagagaagatgagcttggtggaggatttaaacaaa
ggatctaagccagtggttgtcctgcaaaaattaacatttgatgaggttcagaaattcata
aaggagaaggaggataggaatgcaaggagttcgagcaaatctggcaagaacagaccatcc
ttaaaatcgggtaaaggtggaatagaccagtctgtgttgaaggacttgccccctgagctg
cttgcagagattgagtctaccatgcctttatgtgaacgggtaaagatgaacaagcgaaag
cgtgctactgtcaatgagaaaccgaaatatgccgaggtcagctctgatgatgatagtaac
agcgaagaggcctttgagtctgctcgaaaaaaacacaagaaagatcgggataaggcctgg
gagagtgaggagccacgggaaagacggggctctggtgaccacaggaagagcagtcattca
cacgagggcaggaggagctcaggcagccggtaccgagaacgcagcccagaggactctgag
agcgacactcctcctcctagtctcagtgacattgccaaaaggttgaagaaaaaagaaaaa
cagaaaaagagaaaagcatatgaacctaaacttacacctgaagaaatgatggattcatca
acgtttaagaggttctcggccagtgtcgataatattttggagaacctggaagatatggat
ttcacagctttggcggatgacgatgaaattccacaggagttactgttgggcaaacaccag
ctcaacgaactgggcagcgagtctgcaaaaattaaagcgatgggaattacatgcaggctt
ccttcagaaaaactggtgaaagttttaaatattttggagaagaatatacaggatggcgca
aaactttctacgctgttcaaccatgacaacgacactgaggaagaggaaaggctttggaga
gatctcataatggagagagtaacaaaatccgctgatgcttgtctcacagctctcaatatc
atgacttctacccacatgccaaaagccgtgtatattgaagatgtgatagaaagggtgctc
cagtacactaaattccacttgcaaaacactctgtatcctcagtatgatcctgtttacagg
gtcgatcatggaggtggtttgttgagttccaaagcgaagcgggcaaagtgttccacccac
aaacagagggcaatagtgatgctgtacaataaagtgtgtgatattgtaagcaatatgtca
gaactgctggagatacagttgctcactgatacaaccatcctacaggtttcctcaatggga
attacaccatttttcgtagaaggcgtcagtgagctgcagttgtgtgccatcaagttggtg
actgctgtgttctcacgctatgagaagcataggcagttaatattggaggagatcttcaca
tcactggcaaggctgccgacgagcaagcgaagtctgaggaacttcaggctgaatagcagt
gacactgacggagagcctatgtatatacagatggtaactgctctagttctgcagcttatt
caatgtgtggttcacctgccgtcagacaaggatgctgatgatgagtatgataaaaaggtt
gatcaagatgttctaattacaaattcttatgaaactgcaatgaggacagcacagaacttt
ctttcagtctttctaaaaaagtgtggaagcaaacagggcgaagaggattacaggccgctg
tttgagaattttgttcaggatttattatctactgtgaacaagccagagtggccagctgct
gagctgttgctcagtcttctgggcaggctgctggtgcaccagttcagtaacaaacaaaca
gagatggccctgagagtggcatcccttgattatcttggtacagttgcagcaaggctcagg
aaggatgctgtgacaagtaaaatggatcagagcaccatagatcgcatactgaaagagtca
ccgggaaccgatgagatacagcagttacagaaggccttgctagattacctggatataaat
gcagaaactgatccatctttggctttttccaggaagttctacattgcacagtggttccgg
gacactacaactgagacagaaaaagcaatgcggtcacagaaccaaaaagatgaggattcg
tccgagggggcgcatcatgcaagagacatagaaacaacaggagatatcatgcaaaaagca
gaggctcggaagaagtgtcttcgatccatcattaaaactacaccatctaagtttagcacg
ttaaaaatgaattctgattctgtggactatgaggattcctgcctgattgtccgatatttg
gcctccatgaggccgtttgcacagagcttcgatatttatttaacacagattcttcgtgtt
ctgggagagaatgcaattgctgttcgaactaaagccatgaaatgtctgtctgaggttgtc
gctgtggaccctagcattctggccaggctcgacatgcagcgtggcgtccatggacggtta
atggataactccacaagtgtacgagaggcagcagtggagttacttgggcgatttgtgtta
agtcgtccacagcttactgagcagtattatgatatgctgatagagaggatactggacacc
ggtatcagtgtaagaaagagggtgataaagatccttcgtgatatctgccttgaacagccg
acttttagcaaagttacagagatgtgtgtgaaaatgattcgcagagtgaatgacgaagaa
ggcattaagaaactagtaaacgaaacattccagaagctttggtttactcccactcccagt
cacgataaggatgctatgaccagaaaaatactcaacattacagatgtggttgctgcttgc
aaagatactggttatgactggtttgaacagcttcttcagaatttgttgaagtcagaggag
gatgcctcttataaaccagcaaagaaagcctgtgtacagcttgtagacaatctagtggag
cacatccttaaatacgaagaatctctagctgattctgaaaacaaaagcgtgaactccaac
cgcctggtggcatgtattaccactctgtatttgttcagtaagatcagagcacagcttatg
gtgaaacatgcaatgaccatgcagccatacctcaccaccaagtgcaacactcagagtgat
ttcctggtcatctgtaatgttgcaaagattttggagctggtagtaccattgatggagcat
cccagtgaaactttccttgctactattgaggaagatctcatgaaactcatcattaaatac
ggcatgacagtggtgcaacattgtgtgagttgtcttggggcagttgttaataaagtgaca
cacaactacaagtttgtgtgggcatgcttcaacagatattatggagccataaccaagcta
aaaacacagaaccaagaagatccaaacagcacaatccttgctgccaataaacctgcactc
ctgcgctcactcttcactgttggtgctctgtgtcgacattttgactttgaccaagaagag
ttcaaaggcaacaccaaggttgttataaaagaaaaggtactcgaactgctgctttatttt
accaagcatgcagatgaggaggtgcaaacgaaggccatcattggtttaggattttctttt
attcagcaccctagtttgatgtttgagcaggatgtgaagactctatataatggtatcctg
tcagacaaaaacggttctgtgaacttgaaaattcaggtgctgaagaaccttcaaacttac
ctgcaggaggaggacacccgcatgcaggcggctgaccgggaatggaagaaattgtcaaag
caagaggatctgaaagaaatgggtgatatttcctcaggcatgagcagttctataatgcag
ctctacctcaaacaggttctcgaggctttcttccacacgcagtccaacgtacgccacttc
gctctaaatgttattgccctgacactaaaccaaggtctcattcacccagtacagtgtgtg
ccatacctgatagccatgggtacagatcctgaacctaccatgaggaacaaatctgaccag
cagttgattgaaatcgataagaaatacacaggtttcattcatatgaaagctgtggctggg
ataaagatgtcataccaggtacaacaggcaatctgggcagcccacaacacaataataagg
ggattcagacaggatgagcaaaacactgccttgtgttcccaccttttcaccatggtccgt
ggaaaccgccagcacagacgagcatttctcatttctctgctcaacctctttgatgacagt
gcaaaaacggatgtgaacatgctattgtacatagcggacaatctagcctgtttcccattc
cagacgcaggaggagccccttttcgtaatgcatcacattgacatcacactttctgtctca
ggcagtaacctactgcagtcctttagagagtcccttctgaaggaagccaaaccaaaagag
caaaagtactgctcagaggaagaggaagaggatgaggagcaaaccagcgacagtgaggat
gaggcagtgagacgacccaagaagtcctgtcgccgtatcgactcagactctgaatcagat
tctgacaccgagaatgaggacaaggtgatgaggaggttaccggacaatcccacaccgctc
atcgaatttgccaatgcttcccaaggaatcctcctcctgctggtcctaaagcagcatcta
aagaatctctatggattttctgacagtaaaatccagaagtactctccaactgaatcggca
aaagtgtacgacaaagctgtaaacaggaagtcttcagtgcattttaaccctcgacagacc
ctggagtttcttttgaatgatatggctaatgcagcattaactaatgaggttaagaggaag
atcgtcagacagtatcttgatttcaagttactaatggaacacttggatcctgacgaagag
gatgaggagggtgaggctagtgcaaatgcccgaaacaaagctatcaacgcgctgctgggg
ggagccagtccaaaaaacaacgcagctgacaccgaggatgatgagagcgatggagatgaa
aaaggaggagcctccgggtcaagaaagtccaaaaggggaggagagtcagcagaagttgca
ggccacttgaatgaaactgtggaggccatggatgttattgctatctgctgcccgaagtac
aaggacaggccacagatcgccagagttatacagaagaccagtaacggttacagtgttcat
tggatggcaggctcttatagtggagtctgggctgaggctaagaaacgggatggacgcaaa
ctggtgccttgggtagacactgtaaaagagtcggacatcatttacaagaaaattgctctg
acgagcgcacataagctgactaataaagttgttcagactttacgatcgctgtataatgcg
aaggatggaacttccagctaa
DBGET
integrated database retrieval system
