Polyodon spathula (Mississippi paddlefish): 121318382
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Entry
121318382 CDS
T07273
Name
(RefSeq) transcription factor SOX-5-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121318382
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121318382
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
MATalpha_HMGbox
Pox_F17
MHB
Motif
Other DBs
NCBI-GeneID:
121318382
NCBI-ProteinID:
XP_041110901
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All DBs
Position
7:complement(23615169..23826015)
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AA seq
774 aa
AA seq
DB search
MLTDPDLPQEFKRMSSKRPASPYGGTDGEVVMATSRQKLEDKENDGLPVIHLPLNSSYSI
KLQSEEFQSVNSLTRENFGLDSPTSLHNSMEQDSIKGQSLSPYAQQNSSTSPTKTEDSAR
QGSDSGSSVALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLL
AMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLVAHDEQKKLAASQIEKQRQQM
ELAKQQQDQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRALAAAAAQQ
GFLLPPGFNYKPGCSDPYPLQLIPTTMAAAAAATPGLGQLQLQQLYAAQLAAMQVSPGAK
LPGMPHTNLGNIHSPTNIQTEKCRSTPPLKSKEEGAQPLNLSSKPKTRESKSPTSPASPQ
VPSMKMNTGSMKHSFQASLASPHSRMNSIDLLSSISSGGYLNDHDAVNKAFQEARQMKEQ
LRREQQVLDAKVAVVNSLGLNNGRTEKEKAALESLTQQLAAKQSEDGKFNHAMMEFNMSG
DSDGSPSVSDSRMFREARGRGSSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKI
LGSRWKSMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKTIM
RNRRQEMRQYFTVGQQGPIPISSSGVVYPGAIAMAGMPSPQIPSEHSSMSSSPEPSIPVI
QSTYLHSMKTEETQVKEEMHMDDSNGNMYDDFEYEDEDADYGSDSENHIAAQAD
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgctaactgatcctgatttacctcaggagtttaagaggatgtcttccaagcgaccagcc
tctccatatgggggaacagatggagaggtagtcatggcgacaagcagacagaaattggaa
gataaggaaaatgatgggctccctgtcattcacctaccccttaactccagttattccatc
aagcttcagtcggaggagtttcagtctgtaaactctttgaccagggaaaattttggcctt
gacagtcccacttctctccacaactcaatggagcaagatagcataaagggtcagtctctg
agtccatatgcacagcaaaactcatctacctcaccgactaagacagaagacagcgctcgt
cagggcagcgactcaggctcaagcgtggctctggggaccccagagagacgcaagggcagc
ttggccgatgtggtggacacactgaaacagaggaaaatggaggagcttatcaaaaacgag
cctgaggaaacccccagcattgagaagcttctatcaaaagactggaaggacaagcttctt
gccatgggatcagggaactttggagaaattaaagggactccagaaagcctagctgagaag
gagaggcagctcatgggcatgatcaaccagctgaccagtctgagggagcagctgctggtg
gcccatgatgaacagaagaagcttgcagcatctcaaatcgagaaacagcggcagcaaatg
gagctggccaaacagcagcaggatcaaattgcaagacaacagcaacagctcctgcagcaa
caacacaaaatcaacctccttcaacaacagatccagcaggttcagggtcagttgcccccg
ttgatgatcccagtttttcctccagaccagagggcgttagcagcagcggcagcccagcaa
ggattcctactgcccccaggcttcaactacaaacctggatgcagtgacccttaccctctt
cagctgattcctactaccatggcagctgctgccgcggcaaccccaggcctcggccagctc
cagctgcagcagctgtatgcagcccaacttgcagccatgcaggtatctccaggggccaaa
ctacctggcatgcctcataccaacctgggaaacatccactcgccaaccaacatccagaca
gagaagtgcaggagcacccctccattgaaaagcaaggaggaaggtgcacagccactgaat
ctgtcgtccaagcccaagacaagagagagcaaatcaccgacatcccctgcatccccacag
gtccccagtatgaaaatgaacacaggatccatgaaacacagtttccaagcctcactcgcc
agccctcactccagaatgaactcgatagatcttctttcctctatcagctctggtggttac
ttgaatgaccatgacgcagtcaacaaggcttttcaggaagccaggcaaatgaaagagcag
ctcaggagagagcaacaggtgctggatgcaaaggtggctgtagtcaacagtctggggcta
aacaatggcagaacagaaaaggagaaagccgctttggaaagtctgacacagcagcttgca
gcaaaacagtctgaagacgggaagttcaaccatgctatgatggagttcaatatgagcgga
gactcggatggaagccctagtgtgtccgattcaaggatgttccgagaagccagaggcagg
ggaagcagtgagcctcatatcaaacggcccatgaatgctttcatggtttgggcaaaagat
gagaggagaaaaattctacaggccttccctgacatgcacaactctaatatcagcaaaatt
ctggggtctcgctggaagtccatgacaaacttagaaaagcagccttactatgaggaacag
gccaggcttagcaaacaacatctggagaagtaccccgactacaagtacaaacccaggccc
aagcgcacctgcctggtggatggcaagaagctaaggatcggggaatacaaaaccatcatg
cgcaatcggcgccaggagatgaggcagtactttaccgttggacaacaaggtccgatcccc
atcagctcatcaggagttgtgtaccccggagcgattgcaatggcagggatgccctccccg
cagatcccttcagagcactccagcatgtcgagcagcccggagcccagcattcccgtcatc
cagagcacttacctgcacagcatgaagacagaggagacccaggtcaaggaggagatgcac
atggatgacagcaacggaaatatgtatgatgactttgagtacgaggacgaagacgcagat
tacggcagcgacagtgaaaaccacatcgctgcacaagctgactga
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