Polyodon spathula (Mississippi paddlefish): 121318481
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Entry
121318481 CDS
T07273
Name
(RefSeq) stabilin-2-like
KO
K19013
stabilin-2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121318481
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121318481
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Hyaluronan
Cell surface receptors
121318481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fasciclin
EGF_3
Xlink
EGF_STAB1-2
cEGF
EGF_TEN
EGF
EGF_MSP1_1
FXa_inhibition
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
121318481
NCBI-ProteinID:
XP_041111136
LinkDB
All DBs
Position
7:complement(27711922..27764443)
Genome browser
AA seq
2554 aa
AA seq
DB search
MGRNSFQTSFFLLFMMWHCSDSLAFSSRQGNRCDKKTLINAKTACQSCTVSQEVDCLAGY
LKQTQGIGNRDCRYIYKIQNFSLSLSGCSHVCAKEFLDPHCCPGHWGSDCMECPGGAATP
CSNRGNCSEGVAGNGTCSCSAGFGGTACERCAEENIYGSDCNSVCECLHGLCNSGITGDG
KCTCFSGYRGPKCDQPIPECADLECPDKARCIEDAVSGKLVCKCLPDHEGDGKNCKPINP
CLKQVCHRNANCAHLGPNQHQCTCYEGYQGDGQVCMPVDPCQISFGNCPPDSSVCIYDGP
GKSHCQCKEGFENLVPGIGCSLTDVCKTNNPCSKNANCSTIDPGTTECTCNKGYVGNGKT
CYGSIIERLRELNTEPEGKWTGQLSSAITLFDSSLSWPLKSLGPFTIFVPINKGFKGTSM
KSLMDNLLNAQYLSKLHVIAGELNIETLKKSDIYYTLTGKSGETVFSTEDQQVKIRIHGS
KKKGNILQGDIVASNGLIHIVSKLMDNVEPTVESEKEENLMTILADNGKFNRFRSLLQKI
NVAHLLEQTGPYTVFAPTNGALETMEERTLEYLLSSEGSNKLLELLRNHIVPSVELEVVS
IVSSPRLTTMANQVLTFNITNNGQMLVNGEVVLEADIQARNGRLYSLDGVLIPPSIIPVL
PHRCDVTESQVKMGTCVSCSRVTRTSCTSGVATDTFKRGCVFTPNVLGLNTPALGCAQYC
NETTTVPLCCKGFYGPDCSPCPGGFTNPCSGHGQCMDGISGNGTCICEENFRGSRCQLCS
SHEKYGPNCDKKCPCIHGECDNRPESSGACKEGTCQSDYTGKFCERHTSPCGPRVQFCHA
HANCDYSSGTVSCVCKQGYQGDGTTCEEIDPCSNPERGGCSVNAKCIKTGPGTHICQCLV
GWRADGDECQAINNCMEPDRGGCHENANCIYIGPGQSDCECKTGYRGNGIECEPVNPCVE
ENGGCHYMATCKYLSPGTWNCVCQEGFVGDGKICYGNVATELSTVPDAVEFSKWVNAAKI
YEKLSEDTNRTVFVPSESAIEKMNKEDKDFWTSNENLPSLIKYHMVLGIYKLGDLQNLSS
SSMLLTSLHRNSLHVSKRNESTIIEDAAIIASNIAATNGVIHIIDKVLTPNRGQSEALPD
LLTQLDQMPECSIFRGYIIQYSLAKEIEGSSAYTVFVPSNNVIESFLKENGSITLDESHI
RYHIVLSEKLKKQDLQNGIHKETLLGFSYQLGFFLRESQLFVNDAQVNYTDVETSRGVIH
GLGKVLQVQRNRCDQKTSTNTQGKCAACHLKADCPLGTEAVAGKSTNCINSRYILGTRFM
YFGCRPVCVNTIIKRDCCTGFFGAQCESCPGVAGRPCFGNGVCQDGVNGTGVCNCKQGFT
GTACENCETGKYGPSCDQECACIHGLCSDGPSGDGTCECDVGWRGVTCDNKITQDICNNT
CHTSANCLINSDGTSYCKCAAGFKGNGTSCAALDACESSNGGCSPNALCKRTTPGKRVCV
CNAGYTGDGVVCLEINPCLVNNGGCHLNAECTHTGPNQSACNCISGYSGDGIMCNSINPC
VKKNGGCSEFAICNHTGPAERNCTCKSEYIGDGFKCKGTVHKELSLNPITSHYFFQLQAN
AVRDLAGQGPFTVFVPTSRAFKNEANIKQWGTRGLMPQILRYHMVACSQLQPSELNKTKN
VTSLQGELITISYSQDSIVLNNKAKILSSDILSSNGIIHTIDKVLVPESLQIITTGVSGS
KLENLTTVAEHQGYSTFSKLLQDTDMLGLINNPIHQPVTLFWPTNRAMAALPKDQKDFLY
SKENLNKLIEYLKYHIIRDGNILASDLPNSEALKTLQGSDLRVNCGDEDNIGALFLNNRK
CRIVQRQLEFSGGIAHGIDCMLTPPSVGGRCDVLDAVEIMGDCGPCYKVPPCPAGSKPQK
TTKNCVYSPLFKKSFDGCQQICSFVIWRFKCCPGYFGIDCQACPGGPEAPCNSHGRCDEG
KEGRGACTCNTGFYGVACELCAPGRYGPNCQVCNCTEHGTCDEGNKGTGACFCEKGWTGP
LCETQLAVTPVCSPSCSNSAVCKGNNTCECRPLYEGDGRTCTVVNLCQQQNGRCAKEAHC
TQKGVTVTCSCPKGYSGDGYTCVAIDPCVTDNGECHEHATCTMTGPNKRVCECKSGYIGD
GEDCAVKELPINRCAQNNGQCHTDAICTDLHFEDSTVGVFLLRSPQGQYKLVYEAAQEGC
RQEGATIATYNQLSYAQQAGFHMCAAGWLAAERVAYPTAYSNPKCGFGQVGIVDYKVRSN
LSETWDAYCYRMKNVQCACKPGYIGDGYSCSGNLLQVLTANLIFSNFLSQILTYSNNSRH
GEEFVNCLSNLTIQATLFVPDNSVLNENETLSEQDIEYHLSDGNAIYFGDLTNGSKIPTR
LGHSLLISGFTDLQNTSLNSTTRYVNDRYITDWDILAANGIIHVIQEPLRAPPPKPALHA
SHKAGISVGLFLTVVLIGLVGFAAYHYYSRRSRPFQFHYFKSDEGEHVAPIDVDPSICNP
MYEAVFSPHSRDFNAVTDKHQVANSGPYDLLQDS
NT seq
7665 nt
NT seq
+upstream
nt +downstream
nt
atgggcagaaacagctttcaaacttctttctttttattatttatgatgtggcattgcagt
gattcattagcattctcctccagacaagggaacagatgtgacaagaaaactcttatcaat
gccaaaactgcatgccaatcatgtaccgtctctcaagaagtagactgtcttgctggttac
ctcaagcagacacaaggaattgggaaccgagactgcaggtatatatacaaaatacagaac
ttcagcctttccctcagtgggtgcagtcatgtgtgtgctaaggagttcctggatccacat
tgctgtccaggacactgggggtcagactgcatggagtgcccgggtggagctgcgactccc
tgcagtaaccgggggaattgttctgaaggtgtggcaggcaatggtacatgctcttgttcg
gcagggtttggaggtactgcctgtgaaaggtgtgctgaagagaacatctatgggtctgac
tgcaattcagtctgtgagtgtttgcatggactgtgcaacagcggtatcactggtgatggg
aaatgcacctgtttttcggggtacaggggaccaaaatgtgatcaacccattcctgagtgt
gcagacctggagtgccctgacaaggcccggtgtattgaagatgcagtaagcgggaagctg
gtgtgtaaatgcttgcctgatcatgagggagatggaaaaaactgtaaacccattaatccg
tgcctgaaacaggtctgtcaccgaaatgccaactgtgcccatcttggtccaaatcaacac
cagtgtacatgctatgaaggttaccaaggtgatgggcaggtctgcatgccagtggatcca
tgccaaattagttttggaaactgtcctccagactcctcagtttgcatatatgacggcccc
ggaaagtctcactgtcaatgcaaagagggttttgagaatctggtaccaggaattggatgc
agtcttactgacgtttgcaagacaaacaacccctgcagtaaaaatgcaaactgctcaact
attgacccaggaacgactgaatgtacatgcaataaggggtatgtgggtaatggtaaaact
tgctatggaagcatcattgagagactaagagagctgaacacagaaccagaggggaaatgg
acggggcagctgtccagtgcaataacattatttgattcttccttatcctggccattaaaa
tcacttggacctttcaccatattcgtccctataaacaagggattcaagggaacttcaatg
aagtctctgatggacaatctgttaaatgctcagtatctctcaaagctacatgtgattgcc
ggagagctgaatatagagacgttgaagaagagtgatatctactacaccctgactgggaag
tctggggaaacagtcttcagtactgaagaccagcaggtaaaaatcaggatacacgggagc
aagaagaaagggaatattttgcaaggggatattgtcgcatccaacgggctgattcacatt
gtcagcaagctcatggacaatgtggaacccactgtggagagtgaaaaggaggagaatcta
atgacaatacttgcagacaatgggaaattcaacaggttccgatcattattacagaaaatc
aatgttgctcaccttctggagcagactggaccttacactgtatttgcaccaactaatgga
gctttggagaccatggaggagagaactctagagtacctgctatcatcagagggttctaat
aaacttctggaactgttaagaaatcacattgtcccatctgttgagttggaagttgtcagc
attgtatcgtctcctagattgaccacaatggccaaccaagttttaacattcaacatcact
aataatggacaaatgttagtgaatggagaggtggtccttgaggctgacattcaagctaga
aatggacgtctttactccttggatggagttttgattcctccctccatcatcccggtttta
ccacacaggtgtgatgtaactgagtctcaggttaaaatgggtacctgtgtcagttgttca
agggtcactcgaacttcctgtacttctggggtggctacagacacattcaagagaggctgt
gttttcactccaaatgtattaggattgaacaccccagccttggggtgtgctcagtactgc
aatgaaaccacaacagtgcctctttgctgcaaaggtttctatgggcctgactgtagccct
tgccctggaggctttacaaacccctgctccgggcatggccagtgcatggatggaatcagt
gggaatgggacttgtatatgtgaagaaaacttcaggggatcccgatgtcaattgtgttca
agccatgagaaatacggacctaactgtgataaaaaatgtccttgtattcatggagaatgt
gacaatcgcccggagagcagcggtgcttgtaaagaaggcacgtgccagtctgactatact
ggtaaattttgtgagaggcacacaagtccatgtggtcctagagtccagttttgtcatgcg
catgccaactgtgactacagcagtggaacagtcagctgtgtctgcaaacaaggctatcag
ggagatggaacgacctgcgaagagatagatccctgctccaaccctgaacgagggggctgc
agtgtcaatgcaaagtgcattaaaaccggtcccgggacccacatctgccagtgccttgtg
gggtggagggctgacggagatgagtgtcaggcgatcaataactgcatggagccagacagg
ggcggctgccatgagaacgccaactgtatctatattggacctggacagagtgactgtgag
tgtaagactggttaccgtggaaatgggatagaatgtgaaccagtaaatccatgtgttgaa
gaaaatgggggatgtcattacatggcaacctgtaaatatctgtcacctggaacttggaac
tgtgtctgccaggagggctttgttggagatgggaagatttgctacggaaatgtggccaca
gagctgtctactgtaccagatgcggttgagtttagcaagtgggtcaatgctgccaagatc
tatgaaaaactctcagaagatacaaaccgcacagtctttgtgccctctgagagtgccatt
gagaaaatgaacaaggaagataaagacttttggacctcaaatgaaaacctgcctagttta
atcaagtatcacatggtgctgggtatttacaaactgggggatctacaaaacctgtcttca
tcctcaatgctgctcacttcactgcataggaactctctacatgtctcaaagagaaatgag
agtactataattgaagatgctgctataattgcttctaatatcgcagcgaccaatggtgtg
atccacattattgataaggtgttgaccccaaatagaggacagagtgaagctttacctgat
ctactgacgcagctagaccagatgccagagtgctccattttcagaggctatatcatacaa
tacagtctggcaaaagaaatagaaggttcttcagcctacactgtgtttgtcccaagtaat
aacgtcattgaatcttttctcaaggagaatggatccatcaccctggatgaaagccatatt
aggtaccatattgtgctgtctgagaagttaaagaagcaggacttgcagaatggaatccat
aaagagacattgttaggattttcctatcaactaggattctttctcagagagagtcagctt
tttgtaaatgatgctcaggtgaactacacagatgttgagaccagcaggggagtgatccac
gggctggggaaagtgttgcaggtccagagaaacaggtgtgaccagaaaacctccaccaac
acgcaggggaagtgtgcagcctgccacttgaaggcagattgccctttagggacagaagct
gtggctggaaagagtaccaactgtattaacagtcgctacatcttgggaacaaggttcatg
tactttggctgcagacctgtgtgtgtgaacactataattaagagagactgctgtactggt
ttctttggggcgcagtgtgagtcgtgcccaggggtagcaggcaggccctgctttggaaac
ggagtctgccaggatggggttaatggaactggggtgtgcaattgtaaacagggctttacc
gggacagcctgtgaaaactgcgaaacagggaaatatggacccagttgtgaccaagaatgt
gcctgcattcatgggctttgcagcgacgggcccagtggggacggaacatgtgaatgtgat
gtggggtggagaggtgttacctgtgacaacaaaattacgcaagatatatgcaacaacacc
tgccacacaagtgctaactgcctcatcaattctgatggtacttcttattgtaagtgtgct
gctggattcaaagggaacggcacatcctgtgcagccttagatgcctgtgaaagcagtaat
ggaggttgttcacctaacgcactctgtaagagaaccaccccagggaaacgagtgtgtgtc
tgcaatgcagggtacactggcgatggggttgtttgtcttgaaatcaacccttgtttggtt
aacaacggaggatgccatttgaatgctgagtgcacccacactggaccaaatcagtctgcc
tgcaattgcatcagtggttattctggagatgggataatgtgtaactccatcaacccctgt
gttaagaaaaatgggggctgtagtgagtttgccatctgtaaccataccggcccagctgaa
agaaactgcacctgcaagtccgaatacattggtgatggattcaaatgtaaaggcacagtc
cacaaggagctgtcattgaaccccatcacctctcattacttttttcaactacaggccaat
gcagtgagagaccttgctggccaaggccccttcactgtctttgttcccacctcacgcgcc
ttcaaaaatgaagcaaatataaagcaatggggtactagaggattgatgccccagattctc
cgctatcatatggtggcttgcagtcagttgcaacccagtgagctgaacaaaaccaagaat
gtcacaagcctccagggagaactcattaccatctcctactcccaggattccatagtttta
aacaataaagccaagatattgtcaagcgacatattaagctccaatggcataatccataca
atagacaaagtgctggttcctgagagcctgcaaatcattactacaggcgtgtctggttcc
aaactggaaaatctgaccacagtcgcagaacatcagggatattcaacattcagtaaacta
ctccaagacactgacatgctgggccttataaacaatcccatccaccagcctgtcaccctg
ttctggcctacaaacagagcaatggcggccctgcccaaggatcagaaagacttcctttac
agcaaagaaaacctaaacaaactgattgaataccttaaataccacattatcagagatggc
aatattttagcctcagaccttcccaattcagaagcactgaagacccttcagggatcagac
ctacgtgttaactgtggagatgaagacaatattggagcactcttcctaaacaacagaaaa
tgtaggatcgttcagagacagctggagttcagtggtgggattgctcatggcattgactgc
atgctaacaccccctagtgttggaggccggtgtgacgtgctagatgctgttgagataatg
ggggattgtggcccgtgttataaagtgccaccttgccccgcagggagcaaaccacagaaa
acaacaaagaactgtgtctactccccactcttcaagaagagttttgatgggtgccagcag
atatgctcattcgtcatctggaggttcaaatgctgccctggctacttcggcattgactgc
caagcctgccctgggggccctgaagccccctgcaacagccatggaaggtgtgatgagggg
aaggaaggaagaggagcatgcacctgcaacacaggcttctacggcgtggcctgtgaactc
tgtgccccagggcgatatggaccgaactgtcaagtctgtaactgtacagaacatggaacg
tgtgatgaagggaacaaaggaactggggcatgtttctgtgagaagggatggacaggacca
ctctgtgaaacccagctagctgtgaccccagtttgctccccatcctgttccaactctgct
gtgtgcaaggggaacaatacctgtgagtgcaggccgttgtacgagggagatggaagaaca
tgcacagttgtgaacctgtgccagcagcagaatggcaggtgtgccaaggaggcacactgc
acccagaagggggtgactgtgacctgtagctgtcccaaggggtactccggtgatgggtat
acttgtgtagctatcgacccctgcgttaccgacaacggggagtgccacgaacatgccacc
tgtaccatgacaggcccgaacaagagagtgtgtgagtgcaagagcggctacatcggggac
ggggaagactgcgcagtgaaagagctacccatcaaccgctgtgcacagaacaacgggcag
tgccacactgatgccatctgcactgatctacactttgaagacagcaccgtgggagttttc
cttctccgctcccctcaaggccagtacaaacttgtgtatgaagcagcccaggaaggctgc
aggcaagagggggcaacaatcgccacatacaatcagctctcctacgctcaacaggctgga
ttccacatgtgtgcagcaggttggctggcagccgagcgggtggcttacccgactgcctac
tccaaccccaaatgtggcttcggccaggtggggatcgtggactacaaagttcggtccaac
cttagcgaaacctgggatgcgtattgctaccgaatgaagaatgtgcagtgtgcttgtaag
cctggctacataggtgatggctactcctgcagtgggaatcttcttcaagtcctaacagcg
aacctcattttctccaatttcctgagtcaaattctgacgtactccaacaactcgcggcat
ggagaagaatttgtaaactgcctcagcaacctgacgatccaggctaccctctttgtgcct
gacaacagtgtactgaatgagaacgagacgctctctgaacaggatattgagtaccatctc
tctgatggcaatgccatctattttggggatctcactaatggaagcaagatccctactcgg
cttggacacagtctccttatttcaggcttcactgaccttcagaacacaagcttgaatagc
accaccaggtatgtaaatgaccgatacataacagactgggatatactggccgcaaatgga
ataatccacgtcatccaggaaccattacgagccccacctccaaagcctgcactccatgca
tctcacaaagccggaatcagtgtggggctcttcctgacagtggtactgatagggctggtc
gggtttgcggcctaccactactactcacgcagaagcaggcccttccaattccactacttc
aagtcagatgaaggtgaacacgttgccccaattgatgtcgatccaagtatctgcaacccg
atgtatgaggcagtgttctccccacacagcagagacttcaacgcagttacagataaacac
caggttgcaaacagtggtccatatgatctgcttcaggatagttga
DBGET
integrated database retrieval system
