Polyodon spathula (Mississippi paddlefish): 121318533
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Entry
121318533 CDS
T07273
Symbol
lrp6
Name
(RefSeq) low-density lipoprotein receptor-related protein 6 isoform X1
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04150
mTOR signaling pathway
pspa04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
121318533 (lrp6)
04150 mTOR signaling pathway
121318533 (lrp6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121318533 (lrp6)
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
121318533 (lrp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
Vgb_lyase
DUF5050
SGL
EGF_LRP2
EGF
cEGF
Insulin_TMD
CD1107-like
Motif
Other DBs
NCBI-GeneID:
121318533
NCBI-ProteinID:
XP_041111229
LinkDB
All DBs
Position
7:complement(31977406..32038111)
Genome browser
AA seq
1613 aa
AA seq
DB search
MGAVLRSLVLCSFCSLIRGTPLLLYANRRDLRLVDAASGKGNATVVVGGLEDAAAVDFIY
SMGLIYWSDVSEESIKRIVFNQTASLQNVVISGLVSPDGLACDWLGKKLYWTDSETNRIE
VSNLDGSLRKVLFWQDMDQPRAITLDPARGYMYWTDWGEVPKIERAGMDGTSRSIVIDSN
IYWPNGLTLDYAEQKLYWADAKFNFIHRSSLDGKSREPVVEGSLPHPFALTLYDETLYWT
DWNTHSIHSCNKITGDKRQEVHTNIFSPMDIHVFSQKRQPDSALSPCGSNNGGCSHLCLM
SPTKPFYQCACPTGVRLLEDGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLKLDDI
RHAIAIDYDPVDGHIYWTDDEVRAIRRSYLDGSESQFVVTSQVNHPDGIAVDWIARNLYW
TDTGTDRIEVTRLNGTMRKILISEDLDEPRAIVLDPMSGYMYWTDWGEIPKIERAALDGT
DRLILVNTSLGWPNGLALDYAENKIYWGDAKTDKIEVMNTDGSGRKVLVDDKLPHIFGFT
LLGDYIYWTDWQRRSIERVHKRSAEREIIIDQLPDLMGLKATNVHQIIGTNPCADNNGGC
SHLCLYKPQGVQCACPIGLELISDMTTCIVPEAFLLFSRRADIRRISLETNNNNVAIPLT
GVKEASALDFDVTDNRIYWTDITLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNL
YWADTGTNRIEVAKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD
GTGRITIVPNVGRANGLTIDYAERRLYWTDLDTTLIESSNMLGLEREVIADDLPHPFGLT
QYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQGGWNACASTNGH
CSHLCLAVPISGYICGCPAHYSLNSDNKTCSAPTSFLLFSQKTAINRMVIDEQQSPDIIL
PIHNLRNVRAIDYDPLDKQLYWIDSRQNVIRRAQEDGNQSFTVVASPVPNQNLDMQPYDL
SIDIYSRFIYWTCEATNVINVTRIDGRPVGIVIRGEQDKPRAIVVHPEKGYMYFTNLQER
SPKIERAALDGTERELLFFRGLGKPIALAIDNEMGKLFWVDSDLRRIESSDLAGANRIVI
EDSNILQPVGLTVFGNYLYWIDKQQQMIERIDKTTREGRTKIQARIASLSDIHAVSELNM
KEYRKHPCTQDNGGCSHICIVKGDGTTRCSCPVHLVLLQDELSCGEPPTCSPDQFSCLSG
EVDCIPRAWRCDGYPECGDKSDEESCPVCSDSQFQCDSRQCIDITLRCNGEANCQDKSDE
KKCEVNCPVDQFSCANGQCIGKHKKCDHNTDCNDNSDELGCYPTEEPSPQPTNTIGSIIG
VILALFVVGAVYFVCQRVLCPRMKGDGETMTNDFVVHGPSSVPLGYVPHPNSLSGSLPGM
SRGKSVISSLSIMGGSSGPPYDRAHVTGASSSSSSSTKGTYFPPILNPPPSPATERSHYT
MEFDYSSNSPSTHRSYSFRPYNYRHFAPPTTPCSTDVCDSDYTPSRRITTAVIKGYTSDL
NYDSEPFPPPPTPRSQYLSAEENYESCPPSPFTERSYSHHLYPPPPSPCTDSS
NT seq
4842 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccgttctacggagcctggtgttgtgtagtttttgttctttaataagagggacg
ccattgctactttatgcaaatcgcagagacctgcgattggtagatgctgccagcgggaag
ggaaacgccactgtggtggttggtggcttagaggatgcagcagcggtggacttcatctat
tctatgggtttaatatactggagtgatgtgagcgaagaatccattaaaagaatagtgttt
aatcagactgcaagtttacagaatgttgtgatatcggggctggtatctcctgatgggctc
gcttgtgactggttgggaaagaagttatactggaccgactcggaaaccaatcggattgag
gtttcgaatctggatgggtctttgcggaaagttttattttggcaagatatggatcagcca
cgagcaattactttggatccagcgcgagggtacatgtattggacagattggggagaagta
ccaaaaatcgaaagagctggcatggatggtacgagccgatcaatagtaattgacagcaat
atttactggccaaatgggctgacattggactacgctgaacagaaactgtactgggccgat
gccaagtttaatttcattcacaggtcgagccttgatggcaaatccagggaaccggtggta
gaaggctctctcccgcatccctttgcattgactttgtatgatgaaacgttgtactggaca
gactggaacacgcactcgatccactcctgcaacaagatcacaggagacaagcgacaagaa
gttcacaccaatatcttttcccctatggatattcatgtcttcagccagaaaagacagccc
gactcagctctgagtccctgtggaagtaataatggtggttgctcccacttgtgtctgatg
tcgcccacgaagcctttttatcagtgtgcctgtccaaccggggtccggctgctggaggac
ggaaagacttgcaaagacggagccacagagttgttgcttcttgctcgccgcacagacttg
agacggatatccctcgacaccccagattttactgacattgttctaaaactggacgacatt
cgccatgccatagccattgactacgaccctgtggatgggcacatatactggactgatgac
gaggtgcgagccattcgcaggtcctatctggatggttctgagagtcagtttgtggtcacg
tcccaagtgaaccatccagatggcatcgctgtagattggattgccaggaacctttattgg
accgataccggaacagaccgcatcgaagtgacgagacttaacgggaccatgcgcaagatc
ctcatttcagaggaccttgacgagccaagagcaatagtactggatcctatgtctgggtat
atgtattggacagactggggagagattcctaagatcgagcgtgctgcattagatggtacc
gacaggctaattctggttaacacttcactaggctggccgaatggactggcgctggactac
gctgagaataagatctattggggagatgccaagactgacaaaatcgaggttatgaacaca
gatgggtctggtcggaaagttctggtggacgataaactgccgcacatttttgggttcaca
ttactgggggactatatctactggacagactggcagcggcgtagcattgagcgagtgcac
aagcgctctgctgagcgtgagatcatcattgaccagctgcctgacctcatgggtctgaag
gccactaatgtccatcagattataggtacaaacccctgcgcggacaacaatgggggctgc
agtcacctctgcctgtacaagccccagggtgtgcagtgcgcctgccccattggcctggag
ctaatcagtgacatgaccacttgcattgtccctgaagccttcctcctcttctcccgccgg
gccgacatcaggcgcatttccctggaaaccaacaacaacaacgtggctattcccctgact
ggcgtgaaggaggcttctgccctggactttgatgtgactgacaaccgcatctactggaca
gacattaccctgaagaccataagccgggcgttcatgaatggcagtgcccttgaacatgtt
gttgagtttgggctggattacccagaaggcatggcggtggactggttgggcaagaacctg
tactgggctgacacaggcaccaaccggatagaggtagccaagttggatgggcagcaccgg
caagttctggtatggaaagatctggacagtccaagagcgctggccttggaccctgctgaa
gggtttatgtactggacagagtggggtggaaagccaaaaattgaccgcgctgccatggac
gggaccgggcggatcactattgtgcccaacgtgggccgagcaaacggcctcaccattgat
tatgctgaacgaagactttactggacagaccttgataccacgttgatcgaatcctccaat
atgcttggtctggagcgtgaagtcattgcagatgacttgccccacccatttggcctgact
cagtaccaggattacatctactggacagactggagccggcgcagcattgagagagccaac
aagaccagcggccaaaaccgcaccatcattcagggccatttggattatgttatggatatc
ctggtatttcactcctcaagacaagggggctggaatgcatgtgcgtccacgaacgggcac
tgttcccatctctgtctggcagtgcccatcagtggttatatctgcgggtgtcctgctcac
tactccctcaactctgacaacaagacctgcagtgctcccacctccttcctgctgttcagt
cagaagacagcaatcaaccgtatggtgatcgatgagcagcagagtcctgacatcatcctg
cccatccacaacctgcgcaacgtccgagccattgactacgaccccctggacaagcagctc
tactggattgactctcggcagaacgtcatcagaagagcgcaagaagacggcaaccagagt
tttactgtggtggccagcccagtgcccaatcagaacctagatatgcagccatacgacctg
agcatcgacatctacagccgcttcatctactggacctgcgaggccaccaacgtcatcaac
gtcacccgcatagacggcagaccggtgggcattgttatccgaggagagcaggacaagccc
agagcaattgtggtccacccagagaaagggtacatgtactttactaacctgcaagagagg
tctcccaagattgagagagcagcactggatgggacagagagggaactgcttttcttcaga
ggcctcgggaaacccattgccctcgctatcgacaacgaaatgggcaaactgttctgggtg
gactctgacctccgtcgcattgaaagcagtgacctggcgggtgccaaccggattgtaatt
gaagactcaaacatcttgcagccggtcggactaactgtgtttggaaactacctgtattgg
atcgacaagcagcagcagatgattgagagaattgataaaaccacacgggaggggcgcacc
aagattcaagctcgcatcgcctcgctaagcgacatccatgcagtgagcgaactcaacatg
aaggaatacagaaagcatccttgcacccaagacaatggtggctgctcacatatttgcatt
gttaaaggggatggtaccacccgctgctcctgccctgtccaccttgtactgctgcaggat
gagctctcctgtggagaacctccgacctgttccccggaccagttctcctgcttgagtggt
gaggtggactgcatcccacgagcatggcgctgtgatgggtacccggagtgtggagataaa
agtgacgaggagagctgtccagtctgctcagacagccagttccagtgcgacagccggcag
tgcattgacataaccctgcgctgcaatggggaggcgaattgccaggacaagtcagacgag
aagaagtgcgaagttaattgtccagttgaccagttcagctgtgcaaacgggcagtgtata
ggcaagcacaagaaatgtgaccataacactgactgcaacgataactccgatgaactgggc
tgctaccccacagaagagccttctcctcagccaacaaacaccattgggtccatcattgga
gtgatcctggccctgttcgtcgtcggtgccgtgtactttgtgtgtcagcgtgtgctgtgt
ccgcgcatgaagggtgatggagaaacaatgaccaacgattttgtggtccacggcccctct
tctgttccactgggatacgttccacacccaaactccctctccgggtctctaccaggaatg
tctcgagggaaatctgttattagctcattaagcatcatgggtgggagcagtggaccaccc
tacgacagagcccacgttacaggggcctcctccagcagctcttcaagcaccaaaggcact
tacttccctccgattttaaacccccctccttccccagcaactgagcgttcccattacacc
atggagtttgattactcatcaaacagcccatccacccacaggtcatacagcttccgacct
tacaattaccgccactttgctccccccaccaccccatgcagcacggatgtttgcgacagc
gactacacccccagcagaaggatcacgacagctgtgataaagggctacaccagcgacctg
aactatgactctgagcccttcccacccccacccacaccacgcagccagtacctgtctgcg
gaggagaactacgagagctgccctccatcccccttcacggagcgcagctactcccaccac
ctctaccctccgcctccctccccctgcacagactcttcatga
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