Polyodon spathula (Mississippi paddlefish): 121318582
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Entry
121318582 CDS
T07273
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pspa03016
]
121318582 (rtcb)
Enzymes [BR:
pspa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
121318582 (rtcb)
Transfer RNA biogenesis [BR:
pspa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
121318582 (rtcb)
Prokaryotic type
tRNA splicing ligases
121318582 (rtcb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
121318582
NCBI-ProteinID:
XP_041111346
LinkDB
All DBs
Position
7:34926598..34947280
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AA seq
505 aa
AA seq
DB search
MSRTYNDELQYLDKISKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDNPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMGVKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPSKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRTSMTFLARQAFAKVFTTTPDDLDMHVIYDVSHNIAKVEE
HVVDGKQRTLLIHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRAMSRSKSRRNLDFQDVLDSLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaacctacaatgacgagttgcaatatcttgataaaatcagtaaaaactgctgg
cgcatcaaaaaggggtttgtccctaacatgcaggtggaaggggttttctatgtgaacgac
ccgctggagaagctgatgtttgaggagctcaggaatgcctgtcgagggggaggttttggt
ggctttcttcctgctatgaaacagattggcaatgtggctgcattacctggaattgttcac
aggtccattggtctgccggatgtgcactctggttacgggtttgccattggaaacatggcg
gcctttgacatggacaaccctgatgctgtggtctcaccaggtggtgtggggttcgatatt
aactgcggagtccgactgctgcgcacaaacctggacgaaggcgatgtccagccggtcaag
gaacagctcgctcagtccatgttcgaccacattcctgtgggagtgggatccaagggcgtc
atccccatgggcgtcaaagatctggaggaagctctggagatgggggtggactggtccctg
cgggaaggctatgcctgggcggaggataaggagcactgcgaggagtatggcaggatgctg
caggctgaccccagcaaggtctcctccaaagccaagaagagggggctcccgcagctggga
acccttggcgctgggaatcactacgctgagatccaggtggtggatgagatttacaacgac
tatgctgccaagaagatgggcatcgatcacaagggccaggtgtgcgtcatgatccacagc
ggcagcagggggctggggcaccaggtggccacagacgccctggttgcgatggagaaggcg
atgaagagagacaagatcatagtgaacgatcgacaactggcctgtgcacggatcacctcc
caggaggggcaggactacctgaagggcatggctgcagccgggaactatgcctgggtcaac
cgcacctccatgaccttcctagccagacaggcctttgccaaagtgtttaccacgacccct
gatgacctggacatgcacgtgatctacgacgtgtcccacaacatcgccaaggtggaggag
cacgtggtcgacgggaagcagcggactctgctgatccacaggaagggatccacgagggcc
tttcccccccaccaccccctcatcgccgtcgactaccagctgaccgggcagcctgtcctg
attggaggcaccatggggacgtgcagctacgttctgaccggtactgagcagggcatgacc
gagacctttggaaccacctgccacggagctggtcgagcaatgtcccgttcaaaatcgcga
cgcaacctggatttccaggatgttttggacagtcttgcagacaagggtattgcgatccgt
gtcgcctcccccaaactggttatggaagaggctcccgaatcctacaaaaatgtaacagat
gttgtgaacacttgccatgatgcagggatcagcaaaaaagcaataaaactgcggcctatt
gcagtcatcaagggttaa
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