Polyodon spathula (Mississippi paddlefish): 121318642
Help
Entry
121318642 CDS
T07273
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03440
Homologous recombination
pspa04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121318642
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
121318642
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pspa01002
]
121318642
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121318642
03036 Chromosome and associated proteins [BR:
pspa03036
]
121318642
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121318642
Peptidases and inhibitors [BR:
pspa01002
]
Metallo peptidases
Family M67
121318642
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
121318642
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
121318642
BRISC complex
121318642
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
121318642
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
121318642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
FGGY_N
REP_ORF2-G2P
Motif
Other DBs
NCBI-GeneID:
121318642
NCBI-ProteinID:
XP_041111472
LinkDB
All DBs
Position
7:complement(44306890..44316002)
Genome browser
AA seq
261 aa
AA seq
DB search
MAVNAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDTDRIVHIHSVIILRRSDKRKDRV
EISPEQLSAASTEAERLAEMTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFV
GLIFSCFIEDKNTKTGRVLYTCFQSVQAQKGSEYERIEIPVHVVPHETIGKVCLESAVEL
PKILCQEEQDAYRRIHSLAHLDPITKIHNGSVFTKNLCSQMSAISGPLLQWLEDKVEQNK
QNIAELQLEKERLILELTDLD
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgaatgcggtgcacctggaatcagacgcttttttggtgtgcatgaatcatgcg
ctgagtacagagaaggaagaagttatggggctttgcattggagaggttgacacagacaga
attgtgcacatccactcagtaatcatcctgcggcggtcagacaagaggaaggatcgtgtg
gagatctctccagaacagctgtctgctgcctccactgaagctgagaggttagctgaaatg
actggacggccaatgcgagtggtgggctggtaccattcccacccacacattacagtgtgg
ccgtcgcatgttgatgtgcggacccaggcaatgtaccaaatgatggaccagggttttgtt
gggctgatattttcttgtttcattgaggataagaacaccaagaccgggagggtgctctac
acctgctttcagtccgtgcaggcacagaagggctctgagtacgagagaattgagatccca
gtccatgtggtccctcatgaaacaatcgggaaggtgtgcctggagtctgctgtggagctt
cccaagattctgtgtcaggaggagcaggatgcttacaggagaatccacagtcttgctcac
ttggatccgataacaaagattcacaatggctcagtcttcacgaagaatctttgcagccag
atgtcagctatcagtgggcccctgctgcagtggctggaggacaaggtggagcagaacaag
cagaatattgctgagctgcagcttgagaaggagaggctgatactggagctcacagacctg
gactga
DBGET
integrated database retrieval system
