Polyodon spathula (Mississippi paddlefish): 121318666
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Entry
121318666 CDS
T07273
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121318666
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121318666
09142 Cell motility
04820 Cytoskeleton in muscle cells
121318666
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121318666
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121318666
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121318666
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121318666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121318666
NCBI-ProteinID:
XP_041111517
LinkDB
All DBs
Position
7:complement(45920748..46045961)
Genome browser
AA seq
1705 aa
AA seq
DB search
MKYRVLVLFAVYLAVDLVQAGSKSFQGPCGGRDCSRGCQCFPEKGSRGRPGALGPQGPEG
PPGFQGPEGLAGPKGDKGHPGLQGPGGPKGDKGPMGVPGFPGVNGIPGHPGQGGSRGLPG
LDGCNGTMGDTGTRARDGIPGSPGFPGPTGPKGQKGEPVFGGGGIGLRGEPGLPGLDGLT
GARGPAGLPGLVGPRGRSGPAGLPGPPGLPGPIGNMGLGFQGERGDKGEVGQPGLPGQPG
TEVGGPPVSIIFKGVKGEPGSFGFPGQPGIPGLPGPYGIAGELGEKGIIGLPGLRGPAGL
DGQPGFPGGKGQPGFPGQPGRDGIPGRKGFPGEAGPPGPSVYYNGDGTSVKGPPGDPGLD
GAPGIRGDPGFDGLPGQPGLPGLPATPGPPGTSGFPGVSGAKGERGDPGRPALGTPGSPG
RPGYPGPPGPPGIPGPSRPGQQAEIRLGDMGQPGLPGGRGPPGSPGLSGLQGDPGYCLCQ
GRGDNDFNFQGSPGPQGPPGSPGFPGVKGIAGDRGSEGLAGPAGPPGVAGERGYNGLKGQ
KGDPYVPLSRGPPGDPGVPGLRGPSGERGRSGRDGLPGFPGRPGPPGDTSPGLVGDKGLP
GFPGANGRPGERGPAGSGFPGPAGIRGEPGEEGVNGIPGLPGQPGPPGDCCCGGEVGNGL
LDTEGGITLPCKIPGTEGAPGLPGLPGTSGLKGQPGLPGTPGLPGFDGQKGERGSPGFGG
QPGPSGFPGPRGDEGTPGLPGMDGREGPLGKNGSPGLRGPKGAPGEVLGVERGPPGLPGL
SAGPGDKGLPGDPGLPGQKGIGGRPGISGAKGERGQDGFPGNPGLPGLPGAGGLDGIPGS
PGKAGRGGFPGPPGCEGFPGLKGSSGDPGPPGPAGMKGLPGLPGASGLPGQKGFPGGPGP
EGREGRPGVNGRNGEKGFPGMVGFPGMPGTAGRPGAPGLKGPRGFPGRVGPSGDNGGQGQ
KGDRGSPGVPGERVVPLHLMSKGKRGDDGYPGTNGFPGPRGDKGLPGQVGRPGRPGLPGF
QGKEKGSLGDPGYPGPSGQPGFPGQKGSPGIIGFTGMPGEKGSDGFPGPPGFPGSPGTPG
QKGERGDGTGSPGAPGNKGFPGQSGTPGTAGNNGQPGDAGFPGNPGINGQKGLPGNPGRS
GLPGSPGFPGARGNPGFPGSSGLPGSPGFPGANGTPGQKGFAGPPGLDGLNGLQGPKGPP
GTPGLSEPGAAGQPGAQGLKGEPGISRGAIGPPGFPGQKGGKGEPGSPGVPGFPGLPGPA
GISLPSNIPGRPGDVGPPGRDGETGFPGITGPPGPPGPGTAQGDRGDPGFPGMPGLPGSK
GDPGPSGSSGIPGAPGLKGGRGEPGIMGMPGTDGFPGDPGYPGPKGQTGNPGYRGRPGPP
GPISRVESIATPTGDPGLPGIDGEPGESGFPGRLGEMGRPGQKGLPGIIGKTGRNGKPGP
DGVLGDPGPDGIPGAPGLQGAPGRQGGAGLPGNSVRSVSVGYTLVKHSQSDQVPPCPLGM
DRLWEGYSLLYVEGQEKAHNQDLGLAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLS
TTAPIPMMPVSRSEIPQYISRCSVCEVPSLAVAVHSQDITIPPCPVGWRSLWIGYSFLMH
TAAGAEGGGQSLVSPGSCLEHFRATPFIECSGARGTCHYFTNKYSFWLTTVEPRQQFVEA
PPSETLKAGQLRTRVGRCQVCVKNL
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgaagtacagggttttggtcttatttgctgtttatctagcagtcgatttggtccaagct
ggtagcaagtcattccaggggccatgtggaggcagggactgcagcagagggtgccaatgt
ttccctgagaaaggcagccggggtcggccaggtgccttggggcctcaagggccagagggg
cccccggggtttcaaggtccagaggggttagctggaccaaagggcgataaggggcacccc
ggactgcaaggaccaggcggccctaaaggagacaagggaccaatgggtgttccaggattt
ccgggtgtcaatggaattccaggtcatcctggccagggtggctccaggggtctgccaggc
ctggatggctgcaatgggacgatgggagacaccgggaccagggcgagagatgggatacca
ggatcaccaggcttcccaggtcccactggtccaaaaggtcagaaaggagagcctgtcttt
gggggaggaggcattggtttgaggggagagccggggctgccaggtctagacggtttaacg
ggtgcgaggggtccagctggcttgccagggctggttggtccgagaggtcgcagtggtcct
gcgggtttaccaggtcctccaggcctcccaggacccattggcaatatggggcttggtttc
cagggagaaagaggagacaagggagaggtgggacagcctggcctcccaggacaaccaggg
accgaagtaggcgggccgccagtaagcattatcttcaaaggagttaagggcgagccgggc
agctttggctttcctgggcaacctggtattcctggactaccggggccctatgggattgct
ggagagctgggtgaaaagggcatcattgggctgcctggacttcggggaccggctggatta
gatggacagcctggctttccaggaggaaagggtcaaccaggctttcctgggcaaccagga
agagatgggataccagggcgaaagggtttcccaggggaagctggtccacctggtccatct
gtatattataacggagacggaacttcggtgaaaggccctccaggagatccaggcctggac
ggggctccaggaatccgaggtgatccagggttcgatgggctgccaggacagccaggcctc
ccagggctcccagccaccccaggtccaccaggcacctcaggtttccctggagtctcagga
gccaagggagaaagaggggaccccgggagacctgccttaggaacgcctggttcccctggg
agaccgggatacccaggaccccccggcccacctggaatcccagggcccagccgtccagga
cagcaggccgagattagactgggagacatgggacagccgggattgcctggaggtcgaggg
ccacctgggagcccagggctaagcgggctccaaggagatccaggttactgtctctgccaa
ggaagaggggataacgatttcaacttccagggcagccctgggccccagggcccacccggt
tcacctggctttcccggagtgaagggaattgctggagaccgaggatcggaaggtctggcc
ggaccagcaggccctccaggtgttgcaggggaacgtggctacaacggactcaagggacag
aagggagacccgtacgttccactgagcagaggccctccgggagatccaggggtacctgga
ctcagaggcccctcaggcgagcgggggagatcaggccgagacgggctcccaggctttcca
ggccgaccaggcccaccaggagacactagcccaggtctcgtcggagacaaaggcctccca
ggattccctggtgctaatgggcgccctggggagagaggccctgctgggagtggtttccct
ggtccggcagggatccgcggtgagccaggtgaagagggtgtgaatggcattccaggcctg
cccggccagcctggacccccaggtgactgttgctgtggtggagaggttggtaatggactc
ttagacacagagggaggtatcactttgccttgtaagattcccggaaccgagggtgcaccc
ggactgcctggactcccaggaacctcaggattgaaaggacagccaggtttgcccggcacg
cccggattaccagggtttgatgggcagaaaggagagcgtggtagccctggatttggaggg
caacccggaccctcaggtttccctggaccgagaggtgacgagggcaccccaggtctcccg
ggtatggacggcagagaagggcctctaggaaagaacggctccccagggttgcgtggacca
aagggggcccccggagaggtgttgggagtggagcgaggaccccctgggcttccaggcctg
tctgcagggcccggagacaaggggctaccaggagacccagggctgccaggacagaaaggg
attggtggccgacctggcatttccggtgccaaaggagagcgtggtcaggacggtttcccc
ggcaaccccggtttgcctggtctcccgggggctgggggtttggatggcattcccggttct
cccggaaaagccgggaggggaggctttccaggaccacctggctgtgaaggcttcccaggg
ctcaagggctcatcgggggacccaggccccccaggcccagctggtatgaagggtctacct
gggctcccgggggcctcaggactgccggggcagaaggggttccctggcggccccgggcca
gaagggagagagggtcggccaggagtaaatggaagaaacggtgaaaagggcttccctggc
atggtggggttcccgggaatgcccggcaccgcaggacggccaggggccccaggactgaag
ggaccgcgtgggttccccggcagggttggacctagtggagacaatggggggcaaggacag
aaaggtgaccgtggaagcccaggtgtgcccggtgagagagtggtcccactccatctcatg
tcaaaaggaaagagaggagatgacggatatccaggaacaaatggattccccgggccacga
ggtgataaagggctgcctgggcaggtaggccgacccggccggcctggtctgccggggttc
caagggaaggagaaaggctctctgggggacccaggctacccagggcctagcggacaacca
ggattcccaggacagaagggctctcctggcatcatcggcttcacagggatgccaggtgaa
aagggttccgatggttttccagggcctcctggattcccaggcagtccggggacacctgga
caaaaaggtgagcgcggcgatggcactggatctcccggagcccctggaaacaaaggattc
cccggccagtctggaactcctggcacggcaggtaataacggccagccaggcgatgctggt
ttccctggaaaccccggaatcaacggacagaaaggtttacctggaaacccaggccgttca
ggactgccaggtagccctggtttccccggtgctcgtggtaatcctggttttcctggatca
agtggactgcctggatctcctggattccccggcgctaacggcacccctggacaaaaaggt
ttcgctggcccccctggtctggatggtctgaacggattgcaggggccaaaaggcccgcca
ggaacaccaggtctgagtgagcctggggctgctggccagcctggtgcccagggactcaag
ggggagccaggcatttcgagaggagcgatagggccgccaggcttccctgggcagaagggt
ggcaagggagagccaggttctcctggtgttcctggcttccctgggctccccggtcctgct
gggatctccctgccctcaaacattcctgggagaccgggcgatgtgggccccccagggcgg
gatggggaaacaggtttcccaggcattactggcccccctggcccccctggtcccgggact
gctcaaggagacagaggggacccaggcttccccggcatgccaggattacccgggtcaaag
ggagaccccgggcccagcggatcctcaggaatcccaggggcccccggtctcaaaggtggc
cgtggagaacctggcattatgggaatgccaggcacagatggattcccaggagaccccggg
tacccaggacccaaaggtcaaacaggaaatccaggttacaggggaagaccaggcccacca
ggtccgatcagtcgtgtggagagcattgccactcctactggggaccccgggctgcctgga
atcgatggagagccgggagaatcaggattcccaggacggctgggagagatgggaaggcca
gggcagaaaggtcttcctggtatcattgggaagactgggaggaatgggaagcctggtcct
gatggtgttttgggagatcctggtcctgatggcattcccggagcccctggtttgcaaggt
gcccctgggaggcagggtggagccggtctgcctggtaactctgtccgcagcgtcagtgtc
ggctacacccttgtgaagcacagccagtcggaccaggtgcccccctgcccactgggaatg
gaccggctgtgggaggggtatagtttgctgtacgtggaaggacaagaaaaagcacacaac
caggacctgggtcttgccggttcctgcttgcctcgcttcagcaccatgccattcatctac
tgcaacatcaatgaggtctgctactatgccagccgcaatgataagtcctactggctctcc
accaccgcgcccatccccatgatgccggtatcccgcagcgagatcccgcagtacatcagc
cgctgctctgtgtgcgaggtgccctcgctggccgtcgcggtgcacagccaggacatcacc
atcccgccctgccccgtgggctggcgcagcctctggatcggatactccttcctcatgcat
acagcagccggtgctgaagggggaggtcagtccctggtctctcccggctcctgtctcgag
catttccgcgccacgcctttcattgagtgcagcggcgcccgtggcacctgccactacttc
accaacaagtacagcttctggctgaccaccgtggagccgaggcagcagttcgtggaggct
cccccctcagaaacactcaaagctgggcagctccgtacacgagtcggtcgctgccaggtc
tgcgtgaagaacttgtag
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integrated database retrieval system
