Polyodon spathula (Mississippi paddlefish): 121318666
Help
Entry
121318666 CDS
T07273
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04382
Cornified envelope formation
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121318666
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121318666
09142 Cell motility
04820 Cytoskeleton in muscle cells
121318666
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121318666
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121318666
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121318666
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121318666
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121318666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121318666
NCBI-ProteinID:
XP_041111517
LinkDB
All DBs
Position
7:complement(45920748..46045961)
Genome browser
AA seq
1705 aa
AA seq
DB search
MKYRVLVLFAVYLAVDLVQAGSKSFQGPCGGRDCSRGCQCFPEKGSRGRPGALGPQGPEG
PPGFQGPEGLAGPKGDKGHPGLQGPGGPKGDKGPMGVPGFPGVNGIPGHPGQGGSRGLPG
LDGCNGTMGDTGTRARDGIPGSPGFPGPTGPKGQKGEPVFGGGGIGLRGEPGLPGLDGLT
GARGPAGLPGLVGPRGRSGPAGLPGPPGLPGPIGNMGLGFQGERGDKGEVGQPGLPGQPG
TEVGGPPVSIIFKGVKGEPGSFGFPGQPGIPGLPGPYGIAGELGEKGIIGLPGLRGPAGL
DGQPGFPGGKGQPGFPGQPGRDGIPGRKGFPGEAGPPGPSVYYNGDGTSVKGPPGDPGLD
GAPGIRGDPGFDGLPGQPGLPGLPATPGPPGTSGFPGVSGAKGERGDPGRPALGTPGSPG
RPGYPGPPGPPGIPGPSRPGQQAEIRLGDMGQPGLPGGRGPPGSPGLSGLQGDPGYCLCQ
GRGDNDFNFQGSPGPQGPPGSPGFPGVKGIAGDRGSEGLAGPAGPPGVAGERGYNGLKGQ
KGDPYVPLSRGPPGDPGVPGLRGPSGERGRSGRDGLPGFPGRPGPPGDTSPGLVGDKGLP
GFPGANGRPGERGPAGSGFPGPAGIRGEPGEEGVNGIPGLPGQPGPPGDCCCGGEVGNGL
LDTEGGITLPCKIPGTEGAPGLPGLPGTSGLKGQPGLPGTPGLPGFDGQKGERGSPGFGG
QPGPSGFPGPRGDEGTPGLPGMDGREGPLGKNGSPGLRGPKGAPGEVLGVERGPPGLPGL
SAGPGDKGLPGDPGLPGQKGIGGRPGISGAKGERGQDGFPGNPGLPGLPGAGGLDGIPGS
PGKAGRGGFPGPPGCEGFPGLKGSSGDPGPPGPAGMKGLPGLPGASGLPGQKGFPGGPGP
EGREGRPGVNGRNGEKGFPGMVGFPGMPGTAGRPGAPGLKGPRGFPGRVGPSGDNGGQGQ
KGDRGSPGVPGERVVPLHLMSKGKRGDDGYPGTNGFPGPRGDKGLPGQVGRPGRPGLPGF
QGKEKGSLGDPGYPGPSGQPGFPGQKGSPGIIGFTGMPGEKGSDGFPGPPGFPGSPGTPG
QKGERGDGTGSPGAPGNKGFPGQSGTPGTAGNNGQPGDAGFPGNPGINGQKGLPGNPGRS
GLPGSPGFPGARGNPGFPGSSGLPGSPGFPGANGTPGQKGFAGPPGLDGLNGLQGPKGPP
GTPGLSEPGAAGQPGAQGLKGEPGISRGAIGPPGFPGQKGGKGEPGSPGVPGFPGLPGPA
GISLPSNIPGRPGDVGPPGRDGETGFPGITGPPGPPGPGTAQGDRGDPGFPGMPGLPGSK
GDPGPSGSSGIPGAPGLKGGRGEPGIMGMPGTDGFPGDPGYPGPKGQTGNPGYRGRPGPP
GPISRVESIATPTGDPGLPGIDGEPGESGFPGRLGEMGRPGQKGLPGIIGKTGRNGKPGP
DGVLGDPGPDGIPGAPGLQGAPGRQGGAGLPGNSVRSVSVGYTLVKHSQSDQVPPCPLGM
DRLWEGYSLLYVEGQEKAHNQDLGLAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLS
TTAPIPMMPVSRSEIPQYISRCSVCEVPSLAVAVHSQDITIPPCPVGWRSLWIGYSFLMH
TAAGAEGGGQSLVSPGSCLEHFRATPFIECSGARGTCHYFTNKYSFWLTTVEPRQQFVEA
PPSETLKAGQLRTRVGRCQVCVKNL
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgaagtacagggttttggtcttatttgctgtttatctagcagtcgatttggtccaagct
ggtagcaagtcattccaggggccatgtggaggcagggactgcagcagagggtgccaatgt
ttccctgagaaaggcagccggggtcggccaggtgccttggggcctcaagggccagagggg
cccccggggtttcaaggtccagaggggttagctggaccaaagggcgataaggggcacccc
ggactgcaaggaccaggcggccctaaaggagacaagggaccaatgggtgttccaggattt
ccgggtgtcaatggaattccaggtcatcctggccagggtggctccaggggtctgccaggc
ctggatggctgcaatgggacgatgggagacaccgggaccagggcgagagatgggatacca
ggatcaccaggcttcccaggtcccactggtccaaaaggtcagaaaggagagcctgtcttt
gggggaggaggcattggtttgaggggagagccggggctgccaggtctagacggtttaacg
ggtgcgaggggtccagctggcttgccagggctggttggtccgagaggtcgcagtggtcct
gcgggtttaccaggtcctccaggcctcccaggacccattggcaatatggggcttggtttc
cagggagaaagaggagacaagggagaggtgggacagcctggcctcccaggacaaccaggg
accgaagtaggcgggccgccagtaagcattatcttcaaaggagttaagggcgagccgggc
agctttggctttcctgggcaacctggtattcctggactaccggggccctatgggattgct
ggagagctgggtgaaaagggcatcattgggctgcctggacttcggggaccggctggatta
gatggacagcctggctttccaggaggaaagggtcaaccaggctttcctgggcaaccagga
agagatgggataccagggcgaaagggtttcccaggggaagctggtccacctggtccatct
gtatattataacggagacggaacttcggtgaaaggccctccaggagatccaggcctggac
ggggctccaggaatccgaggtgatccagggttcgatgggctgccaggacagccaggcctc
ccagggctcccagccaccccaggtccaccaggcacctcaggtttccctggagtctcagga
gccaagggagaaagaggggaccccgggagacctgccttaggaacgcctggttcccctggg
agaccgggatacccaggaccccccggcccacctggaatcccagggcccagccgtccagga
cagcaggccgagattagactgggagacatgggacagccgggattgcctggaggtcgaggg
ccacctgggagcccagggctaagcgggctccaaggagatccaggttactgtctctgccaa
ggaagaggggataacgatttcaacttccagggcagccctgggccccagggcccacccggt
tcacctggctttcccggagtgaagggaattgctggagaccgaggatcggaaggtctggcc
ggaccagcaggccctccaggtgttgcaggggaacgtggctacaacggactcaagggacag
aagggagacccgtacgttccactgagcagaggccctccgggagatccaggggtacctgga
ctcagaggcccctcaggcgagcgggggagatcaggccgagacgggctcccaggctttcca
ggccgaccaggcccaccaggagacactagcccaggtctcgtcggagacaaaggcctccca
ggattccctggtgctaatgggcgccctggggagagaggccctgctgggagtggtttccct
ggtccggcagggatccgcggtgagccaggtgaagagggtgtgaatggcattccaggcctg
cccggccagcctggacccccaggtgactgttgctgtggtggagaggttggtaatggactc
ttagacacagagggaggtatcactttgccttgtaagattcccggaaccgagggtgcaccc
ggactgcctggactcccaggaacctcaggattgaaaggacagccaggtttgcccggcacg
cccggattaccagggtttgatgggcagaaaggagagcgtggtagccctggatttggaggg
caacccggaccctcaggtttccctggaccgagaggtgacgagggcaccccaggtctcccg
ggtatggacggcagagaagggcctctaggaaagaacggctccccagggttgcgtggacca
aagggggcccccggagaggtgttgggagtggagcgaggaccccctgggcttccaggcctg
tctgcagggcccggagacaaggggctaccaggagacccagggctgccaggacagaaaggg
attggtggccgacctggcatttccggtgccaaaggagagcgtggtcaggacggtttcccc
ggcaaccccggtttgcctggtctcccgggggctgggggtttggatggcattcccggttct
cccggaaaagccgggaggggaggctttccaggaccacctggctgtgaaggcttcccaggg
ctcaagggctcatcgggggacccaggccccccaggcccagctggtatgaagggtctacct
gggctcccgggggcctcaggactgccggggcagaaggggttccctggcggccccgggcca
gaagggagagagggtcggccaggagtaaatggaagaaacggtgaaaagggcttccctggc
atggtggggttcccgggaatgcccggcaccgcaggacggccaggggccccaggactgaag
ggaccgcgtgggttccccggcagggttggacctagtggagacaatggggggcaaggacag
aaaggtgaccgtggaagcccaggtgtgcccggtgagagagtggtcccactccatctcatg
tcaaaaggaaagagaggagatgacggatatccaggaacaaatggattccccgggccacga
ggtgataaagggctgcctgggcaggtaggccgacccggccggcctggtctgccggggttc
caagggaaggagaaaggctctctgggggacccaggctacccagggcctagcggacaacca
ggattcccaggacagaagggctctcctggcatcatcggcttcacagggatgccaggtgaa
aagggttccgatggttttccagggcctcctggattcccaggcagtccggggacacctgga
caaaaaggtgagcgcggcgatggcactggatctcccggagcccctggaaacaaaggattc
cccggccagtctggaactcctggcacggcaggtaataacggccagccaggcgatgctggt
ttccctggaaaccccggaatcaacggacagaaaggtttacctggaaacccaggccgttca
ggactgccaggtagccctggtttccccggtgctcgtggtaatcctggttttcctggatca
agtggactgcctggatctcctggattccccggcgctaacggcacccctggacaaaaaggt
ttcgctggcccccctggtctggatggtctgaacggattgcaggggccaaaaggcccgcca
ggaacaccaggtctgagtgagcctggggctgctggccagcctggtgcccagggactcaag
ggggagccaggcatttcgagaggagcgatagggccgccaggcttccctgggcagaagggt
ggcaagggagagccaggttctcctggtgttcctggcttccctgggctccccggtcctgct
gggatctccctgccctcaaacattcctgggagaccgggcgatgtgggccccccagggcgg
gatggggaaacaggtttcccaggcattactggcccccctggcccccctggtcccgggact
gctcaaggagacagaggggacccaggcttccccggcatgccaggattacccgggtcaaag
ggagaccccgggcccagcggatcctcaggaatcccaggggcccccggtctcaaaggtggc
cgtggagaacctggcattatgggaatgccaggcacagatggattcccaggagaccccggg
tacccaggacccaaaggtcaaacaggaaatccaggttacaggggaagaccaggcccacca
ggtccgatcagtcgtgtggagagcattgccactcctactggggaccccgggctgcctgga
atcgatggagagccgggagaatcaggattcccaggacggctgggagagatgggaaggcca
gggcagaaaggtcttcctggtatcattgggaagactgggaggaatgggaagcctggtcct
gatggtgttttgggagatcctggtcctgatggcattcccggagcccctggtttgcaaggt
gcccctgggaggcagggtggagccggtctgcctggtaactctgtccgcagcgtcagtgtc
ggctacacccttgtgaagcacagccagtcggaccaggtgcccccctgcccactgggaatg
gaccggctgtgggaggggtatagtttgctgtacgtggaaggacaagaaaaagcacacaac
caggacctgggtcttgccggttcctgcttgcctcgcttcagcaccatgccattcatctac
tgcaacatcaatgaggtctgctactatgccagccgcaatgataagtcctactggctctcc
accaccgcgcccatccccatgatgccggtatcccgcagcgagatcccgcagtacatcagc
cgctgctctgtgtgcgaggtgccctcgctggccgtcgcggtgcacagccaggacatcacc
atcccgccctgccccgtgggctggcgcagcctctggatcggatactccttcctcatgcat
acagcagccggtgctgaagggggaggtcagtccctggtctctcccggctcctgtctcgag
catttccgcgccacgcctttcattgagtgcagcggcgcccgtggcacctgccactacttc
accaacaagtacagcttctggctgaccaccgtggagccgaggcagcagttcgtggaggct
cccccctcagaaacactcaaagctgggcagctccgtacacgagtcggtcgctgccaggtc
tgcgtgaagaacttgtag
DBGET
integrated database retrieval system
