Polyodon spathula (Mississippi paddlefish): 121318703
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Entry
121318703 CDS
T07273
Name
(RefSeq) rab proteins geranylgeranyltransferase component A 1-like isoform X1
KO
K23460
Rab proteins geranylgeranyltransferase component A
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pspa01006
]
121318703
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121318703
Prenyltransferases [BR:
pspa01006
]
Protein prenylation
Rab geranylgeranyltransferase
121318703
Membrane trafficking [BR:
pspa04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121318703
Endosome - Lysosome transport
Rab GTPases and associated proteins
121318703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GDI
RAE1_2_domI_C
NAD_binding_8
FAD_oxidored
Motif
Other DBs
NCBI-GeneID:
121318703
NCBI-ProteinID:
XP_041111591
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All DBs
Position
7:complement(47999824..48041744)
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AA seq
688 aa
AA seq
DB search
MSGDHLPSEFEVLIVGTGLPESVIAAACSRIGQKVLHVDRSAYYGGNWASFTFSGLLSWI
EEHKQEACNKDEVKEWKDKIQEGEEAILLNTADKTITNVEVFRFASQDSEDNIQEEGVFQ
LKHDSSVTAPGTEEYSGSSTGCHGQQIQATVTNTVESSPSEDPVRSGSQASAQATDDAPS
SQEENHGNMFSTESEKQEAGVTEQVSASPASECTDGKKRKKITYSQIVKEGRRFNVDLTS
KLLYAKGSLVDLLIKSNVSRYAEFKNATRILTFQNGKVEQVPCSRADVFASKQLTVVEKR
MLMKFLTFCMDYQQHPEEYLDFKDHTFVEFLKMKKLTANLQHFVHHSISMVSETAKTTEG
LRATQNFLQCLGRYGNTPFLFPLYGNGEIPQCFCRMCAVFGGIYCLRHAVQCLVVDKETK
RCKAVIDTSGMRISSKHFIVEDSYVADEQRKSVQHRQISRAVLITDKSLLKAESDQQISL
ITVPPLEPGRPAVRIIELCSSSMTNMQGTYLVHLTCPSSGTAKEDLSLVVSRLFSENVDA
DEKDADSSVEKPSVLWALYFNMRDSSVAERSSYSLPCNVYVCSGPDSTLGSDHSIKQAES
IFGQLFPGEEFCPPAPNPEDIIYDGDGAETENAGFGTPLEPEHNKPEEDAVPEQENEKAM
TETTEKNTTVTPVSLATCDNSTEEQDTE
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgtctggtgatcatctcccttctgagtttgaggttttgattgtggggacaggccttcca
gaatctgtcattgcggcagcatgctcaaggatcggccagaaggttttgcatgttgacagg
agtgcttattatggaggaaactgggccagttttacattttctgggttactgtcctggatt
gaagaacacaagcaagaagcctgcaacaaagatgaagttaaagagtggaaagataagatt
caggaaggtgaagaagctatactgttaaacactgcggataagaccataaccaatgtggaa
gtattccgttttgcaagtcaggattcagaggacaatatacaggaagagggtgtctttcag
ttgaaacatgatagttcagttactgctcctgggacagaggaatatagtggtagttcaaca
ggttgccatggtcaacaaatccaggctacagttactaatactgtagagtcatctccatca
gaggatccagtgaggagtggctcacaagcctctgcccaggcaacagatgatgcaccatcc
agccaggaagaaaaccatggcaatatgttttctacagaatctgaaaaacaagaagctggt
gtaactgaacaggtctcggcttctccagcatcagaatgtactgatggaaaaaagaggaaa
aagatcacctattcccagatcgtcaaagaaggcagaaggtttaatgttgatttaacttcc
aagcttctgtatgccaagggctctttggttgacctccttattaagtccaacgttagtagg
tatgcagaattcaaaaatgctaccaggatacttactttccaaaatggaaaagtggagcag
gtgccttgttcacgagcagatgtctttgcaagcaagcagcttactgtggtggagaagaga
atgctaatgaagttcctcacattttgtatggactatcagcaacatcctgaagaatacttg
gatttcaaagaccacacatttgtcgagtttttgaagatgaaaaagctaacggctaacctg
cagcactttgtccatcattcgatctccatggtctcggagactgctaaaaccacagagggc
ctccgtgctacccagaatttcctgcagtgtcttgggcgttatggaaacacccccttcctt
ttccccctgtatggaaatggggaaatcccacagtgcttttgcagaatgtgtgcagttttc
ggcggaatctactgtcttcgacatgcagtgcagtgcttggtggtagacaaagaaacaaag
agatgtaaagcagtgatcgacacttctggcatgcgaatcagcagcaaacatttcattgtg
gaagacagctatgtggcagatgagcagcgcaagagtgtccagcatagacagatttctaga
gctgtcctcatcacggataagtctttgttgaaggcagaatcggatcagcagatttccctt
ataacggttcccccgctggagcctggccgtcctgccgtccgtattattgaactctgttcc
tcatccatgacaaatatgcagggaacgtacttggtccatcttacctgtccatcttcaggg
actgctaaagaagatttgagtctagttgtgtccagattgttttctgaaaatgtggatgcg
gatgaaaaggatgctgattcaagcgtggagaagccttcagtgttgtgggccctgtatttt
aacatgagagactcctctgtagctgagagaagctcctacagtctgccttgtaatgtctac
gtctgttctggaccagactcgactcttggcagtgatcattctattaaacaggctgagagt
atctttggtcagttgttccctggtgaggagttttgccctcctgccccaaatcctgaagac
attatttatgatggagatggagccgagacagagaatgcaggctttgggacccctttggag
ccagagcataacaagccagaagaggatgcagttcctgaacaggagaatgaaaaagcaatg
acagaaacaacagagaaaaacaccactgttaccccggtcagtttggctacttgcgacaat
tcaacagaagaacaagatacagaataa
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