Polyodon spathula (Mississippi paddlefish): 121318752
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Entry
121318752 CDS
T07273
Name
(RefSeq) nuclear pore glycoprotein p62-like isoform X1
KO
K14306
nuclear pore complex protein Nup62
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121318752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121318752
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121318752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Tsc35
Nup188_C
Motif
Other DBs
NCBI-GeneID:
121318752
NCBI-ProteinID:
XP_041111703
LinkDB
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Position
7:52052278..52057898
Genome browser
AA seq
610 aa
AA seq
DB search
MSGFNFGASSGGFNFGTPKTTAGGTPGFSLTGASTTGTTGGGFSFGTPSQAPVQPSSLFS
MATPASSGSQTGFSFGAQATSTPAAAPVQTTGGGFSFGASAPKVNLAMPNPTQALTTAGL
TLGNSMAASTGTGFSLGGALSTQSTAAPSGGGFSFGSSGSLGGAITQQQQQQQQQQQQQQ
QQLLQQQQPAASGFSLGSSAAAQPSVGFSFGAAKVQVTTTAPSATSGGFSFGNNTAPATS
QPAATLSLGAPTTGLTLGSLAPASTAAAATGTTTQGTGMLFGAKPQALTSAAPTTTLAST
TLGSSLFASPAPVSSAPSSFTLGSTTAPTATSSAASAAAGGGLGFMLKPLGVTTAASTAL
SAAAPTGAVTGFSLGMKPAGLGTIGTTAPPATTTTITATAALTASAPPVMTYSQLENLIN
KWSLELEDQERHFLQQATQVNAWDRMLIENGEKITSLHREVEKVKLDQRRLDQEMDFILS
QQKELEDLLTPLEESVKEQNGTIYMQNADEEREKTYKLAENIDAQLKRMSQDLKEIIEHV
NTSSSSSETSDPVSGGFNLLQICKILNAHMDSLQWIDQNSVLLQRRVEEVSKLCEGRRKE
QEKNFRIAFD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgagtggatttaattttggtgcctcgtccggtggctttaacttcggtacccccaagacg
acagcagggggcactcctgggttttcactgactggggccagcaccacaggaactacagga
ggtgggttctcctttgggaccccttcccaggctcctgtccagccctctagtctcttctcc
atggctactccggcaagctctggttctcaaacaggattcagctttggagcccaagccact
tcaacaccagcagcagcacctgtccagaccactggaggggggttctcatttggtgccagt
gctccaaaggtaaaccttgccatgccgaatcccacccaggccttgaccactgctggtctg
accctgggtaacagcatggcagcctccacagggacagggttctcccttgggggagcactg
tccacccagagcacagcagccccttctggaggggggttcagctttggttctagtgggagt
ctagggggtgccataacacaacaacaacaacaacaacaacagcagcagcagcagcagcag
cagcagctactacaacaacaacaaccagcagccagtggattctcccttgggagtagtgct
gctgcccagccttctgtggggttttcttttggggcagcaaaggtgcaggtgaccacaacg
gcccccagtgcaaccagcgggggattctcgtttgggaataacactgcccctgcaaccagc
caacccgcagcgacactttcccttggtgctccaacaacagggcttactttgggatcctta
gcaccagcttcaactgcagcagcggccacagggaccacaacccaggggacaggcatgtta
tttggtgccaaaccccaagccttaacctccgcagcccccaccaccaccctggccagcaca
acattagggtcctctctctttgcttcaccggcccccgtctcatcagctccctccagcttc
acacttgggtctacaactgcccctacagctacctcttcagcagcatcagcagcagcagga
ggaggattggggttcatgctgaagcctctgggggtcaccacagcagccagcactgctctg
tcagctgctgcccccacaggtgcagtcactgggttctccctcggaatgaaacctgcagga
ttgggcactattggaaccacagctccccctgccaccaccaccaccatcacagcaactgca
gccttaacagccagtgcccccccagtaatgacatactcccagctggagaacctgataaac
aagtggagtctggagctagaagaccaggagaggcacttcctgcagcaggcaacacaggtc
aatgcctgggaccgcatgcttatcgagaatggcgagaagatcacatctctacacagagag
gttgagaaagtgaaacttgaccagcgaaggctggaccaggagatggatttcatcctgtct
cagcagaaagagctggaagatctgctgacaccccttgaggagtctgtgaaggagcagaac
gggaccatctacatgcagaatgcagacgaggagcgagagaaaacatacaagctggcagag
aacatagatgcccagttgaagagaatgtcccaggacctgaaggaaatcatcgagcatgtg
aacacatccagcagctcctctgaaaccagtgacccggtatccgggggatttaatcttctg
caaatctgcaaaattctaaatgcacacatggattcacttcagtggatcgaccaaaattca
gtcttgctgcaaaggcgggtggaagaggtgtccaagctctgtgagggtcgtcgcaaggaa
caagaaaaaaactttcgtattgcatttgattaa
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