Polyodon spathula (Mississippi paddlefish): 121318810
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Entry
121318810 CDS
T07273
Symbol
cstf2
Name
(RefSeq) cleavage stimulation factor subunit 2 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121318810 (cstf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121318810 (cstf2)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121318810 (cstf2)
U7-dependent histone pre-mRNA processing factors
121318810 (cstf2)
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Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
RRM_Rrp7
Motif
Other DBs
NCBI-GeneID:
121318810
NCBI-ProteinID:
XP_041111822
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Position
7:complement(54392087..54403552)
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AA seq
539 aa
AA seq
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MTSLAAAVAAAAAAAANRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVY
DRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAP
VIESPYGEPCNSEEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLA
YALLQAQVVMRIVDPEIALKMLHRPTNIQPLIPNSQPGHGSVPNLPLNQPNPPVSQPQQM
MGMHVNGAPQMMQPAQILGGVTVPGPLGPAGGMQQQVGIPQGGPVPMDRGQGSLQHSPVG
PAGQAPIERPQVPMPDPRAPMRGGPPVAAVPPRGLLGDGPNDPRGGTLLSVTGEVVEPSR
GGFMGAPPHQGPPMHLPHDGRGPPPDNRMAHDMRGGPMGEPRGMMGEPRGPMMDQRGPPM
EARGGRDPRGVEPRGLDPRCPVPAPRVPMPGGMQGPGPHNMGASVPQPARQPAPGLPVGA
QPGGFSPAQSQVTPQDHEKAALIMQVLQLTPEQIAMLPPEQRQSILILKEQIQKSAGAP
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgacgagtttagcggctgctgttgctgctgcagctgctgctgcggcgaacagagatccc
gccgtggaccggtccctgcgctctgtgttcgtgggtaatattccatatgaagctacagag
gagcagttgaaagatattttctcagaagttgggctggtggtcagtttcaggttagtgtat
gacagggaaactggcaagcccaaggggtatggcttctgcgagtaccaggatcaggagacc
gccctgagtgccatgcgcaacctgaacggacgagaattcagcgggcgagccctgcgtgtg
gacaatgctgccagtgaaaagaacaaggaagagctcaagagtctgggcactggtgccccg
gtaattgagtcaccgtatggagagccctgtaactctgaagaagcccccgagtcaatcagc
cgcgctgtcgccagcctccccccagagcagatgtttgagctgatgaaacagatgaaactg
tgtgttcagaacagcccccaggaagcccggaacatgcttctccagaacccccagctcgcg
tacgcattgctgcaggcacaggtggtcatgaggattgtggaccccgaaatcgcactgaaa
atgcttcaccggcccacaaacatccagccgctgattccgaacagccagcctggtcatgga
tccgttccgaacctgcctctcaaccagcccaaccctccagtgtctcagcctcagcaaatg
atgggcatgcatgtgaatggagcccctcagatgatgcagcccgctcaaatcttgggaggg
gtgacggtgccaggccctctgggtccagcaggtggcatgcagcagcaagttggcattcct
caaggaggtcctgtaccaatggacagagggcaaggaagtcttcagcactcgcctgtagga
cccgcagggcaggcgccgatcgagcggcctcaagtgcccatgccagacccccgggccccc
atgagagggggtcccccagtggcagctgtgcctccccgaggcttgctgggagacgggccg
aatgacccccgagggggcaccctgctctctgttacaggggaggtggtagagcccagccgg
gggggcttcatgggtgcaccacctcaccaggggccgccgatgcacctcccccacgatgga
cgaggccccccaccagacaaccgcatggcacacgacatgaggggtggccctatgggagaa
cccaggggcatgatgggagagcccagaggaccaatgatggatcagcgagggccgccaatg
gaggccaggggaggccgggatccgagaggggttgagcccaggggtcttgatcccaggtgc
cctgtccctgcacccagggtccccatgcctggtggaatgcagggtccggggccacacaat
atgggagccagtgtgcctcagcctgccagacagccagcgcccggtctccctgtgggggca
cagccaggaggtttcagccctgcccagagtcaggtgaccccgcaggaccatgagaaggct
gccctgatcatgcaggtcctccagctgacccccgagcaaatcgccatgctgccaccggag
cagagacagagcatcctcatcctgaaggagcagattcagaaatcagcaggagccccctga
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