Polyodon spathula (Mississippi paddlefish): 121318898
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Entry
121318898 CDS
T07273
Name
(RefSeq) ras-related protein Rab-39B
KO
K07925
Ras-related protein Rab-39B
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121318898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121318898
09183 Protein families: signaling and cellular processes
04031 GTP-binding proteins [BR:
pspa04031
]
121318898
Membrane trafficking [BR:
pspa04131
]
Autophagy
Other autophagy associated proteins
Rab GTPases
121318898
GTP-binding proteins [BR:
pspa04031
]
Small (monomeric) G-proteins
Rab Family
Rab39/42 [OT]
121318898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ras
Roc
Arf
MMR_HSR1
Gtr1_RagA
RsgA_GTPase
GTP_EFTU
AAA_22
TniB
Motif
Other DBs
NCBI-GeneID:
121318898
NCBI-ProteinID:
XP_041112016
LinkDB
All DBs
Position
7:complement(56323673..56327925)
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AA seq
213 aa
AA seq
DB search
MEAIWLYQFRMIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKL
QIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEEARSHVQPHQIVFVL
VGHKCDLDGQRQVSRQEAEKLAGSYGMRYVETSARDAINVEKAFTELTRDIFELVKRGDI
TIQEGWEGVKSGFVPNVVHSSEEVMKSDRRCLC
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgatatggttgtaccagttccggatgatcgtgattggtgattctacggtcgga
aagtcgtgcctcattcggcggttcaccgagggacgcttcgcccaggtgtccgacccaacg
gtcggtgtggatttcttctcgcggctggtggagatcgagccggggaaacgcattaaactg
cagatctgggacactgcggggcaggagcgtttcaggtccatcacccgcgcttactatcgc
aactcagtgggcgggctgctgctgttcgacatcaccaaccggcgctccttccagaacgtg
catgagtggctggaggaggcgcgcagccacgtgcagccgcaccagatcgtcttcgtgctg
gtggggcacaagtgcgacctggacgggcagcggcaggtgagccggcaggaggcggagaag
ctggcgggctcctacgggatgaggtacgtggagacctcggcgcgggacgccatcaacgtg
gagaaggccttcaccgagctgacacgggacatcttcgagctggtcaagcgaggagacatt
accatccaggagggctgggagggggtcaagagcggcttcgtgcccaacgtggtgcactcc
tccgaggaggttatgaagagtgaccgccgttgtctctgctaa
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