Polyodon spathula (Mississippi paddlefish): 121318923
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Entry
121318923 CDS
T07273
Name
(RefSeq) probable ribonuclease ZC3H12B
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121318923
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
121318923
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
KH_N4BP1_1st
zf-CCCH_2
UBA_N4BP1_C
zf-CCCH_4
Omega-toxin
Motif
Other DBs
NCBI-GeneID:
121318923
NCBI-ProteinID:
XP_041112058
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All DBs
Position
7:57490823..57507715
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AA seq
958 aa
AA seq
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MVLELAAPARAGPLLQRCIPHIERVFRVRVSHSSAESNCGSAVASSSIRLNIGEGEEGDC
RKAKDYIVSLVSPEHRIKERLTLALRKRLLTVKSTIEYDSQAVVEIKENALEISGGEHNV
MTAWSMVKKLKMEKWSSREEVNVLRETAADCSAESEDGTSSESETEPACNKKREPLINNK
PHRQLCRSPCLDRPSFSQSSILQDLRADDARAASCKLSLDKEYQAKMDFALKLGYSGEQI
QTVLNKLGADALINDILAELVRLGNKGDIDTQSNACTSSSMLVPRGPCTKEIASPEISLE
EEAVDNLDNLRPIVIDGSNVAMSHGNKEVFSCRGIQLAVDWFLEKGHKDITVFVPAWRKE
QSRPDAPITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLACESDGIIVSNDN
YRDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPVIPEHKKQP
CPYGKKCTYGHKCKYYHPERANQSQRSVADELRAFAKLSAVKTMSEGALAKCGTGPATAK
GESSSEVKRIAPKRQSDPSIRSVACEQEERLSAARKPEASSVPSLVSALSVPTMQPAKSH
AAGALNTRSASSPVPGSSQFSQCSSLEHMSSVQYPPILVTNSHGTSISYSEQYPKYDTGG
ADHGYYSMLSDFSNLSLGSMHNSDSFYSMEQEHGMYTRNPSPCPDPCISHSSNESSYSYG
DMYMSSGDGGPEENVKCHLSPSQNRLQPFSHGFHEALKRVQSYGPDEPKQAPRKQSVSHL
APHVQHPVVGARSSCPGDYPIPENVHPSSTSQPSRALGMTRMDSISDSRLYESNPMRQRR
PPLCREQHASWDPLPCGTESYGYHSYPLSSNLMQPYYERVMVRSMPEKMEQTWRSPWEGM
PAEPQERHVIPEHQYQTYRNLCNIFPQYIVHSVMEKNPHMTDPQQLAAVIVTKLRSGR
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggttttggagctggcagcgcccgcgagagcaggccccctgctgcagcgctgtatcccg
cacatcgagcgtgttttccgggtaagggtcagccacagctccgctgagtcaaactgcggc
agcgctgtcgccagcagcagcattaggctgaatatcggagagggtgaagaaggcgactgc
agaaaggcaaaagactatatagtttcacttgtctctccggagcacagaataaaggaacgc
ttaacattagcgttgcgtaaacggctgctgacagtgaaatccaccattgagtatgactcg
caggctgttgtggagataaaagaaaatgctcttgagatttcgggcggcgagcacaacgta
atgacggcctggtccatggtgaagaagttgaaaatggagaaatggtcctccagagaagaa
gtgaacgttctcagagagacagcagcagactgcagcgcagagtctgaggacggcacaagc
tccgagagcgaaactgagccagcgtgcaacaagaagagggagccactaatcaacaacaag
ccccaccgccagctctgccgctccccctgcctggaccggcctagcttctcccagagcagc
atcctgcaggacctccgagccgacgacgccagggcagccagctgcaagctcagcctggat
aaggagtaccaggccaaaatggattttgctttgaagctggggtattctggtgaacagatc
cagactgtacttaacaaactgggtgctgacgccctcattaatgacattctggcggaactt
gtgaggctgggcaataagggcgacatagacacacagagtaacgcatgcacgagctcaagc
atgttggtacctcggggcccctgtacaaaggaaatcgccagcccagaaatctcattggaa
gaggaagcagtggacaatttagacaatttgagaccaatagtgattgacgggtctaatgtg
gctatgagtcatggaaacaaagaggtgttctcttgtcgtgggatccagctggctgtcgac
tggtttctggagaaggggcacaaagacatcacagtgttcgtgccagcgtggaggaaggag
cagtccagacccgacgcaccaatcacagatcaggagatcctgagaaagcttgaaaaggag
aagattcttgtattcacaccttcacgaagagtccaggggaggagggtggtgtgctacgat
gatcgctttattgtgaagctggcatgtgaatctgatggcatcattgtgtccaatgataat
taccgggatctgcagaatgagaaaccagagtggaagaagttcatagaagagcggctctta
atgtactcctttgtaaacgacaagtttatgccacctgatgatcctttggggcgtcatggt
ccaagtttggaaaattttctcagaaaacgaccagttattcctgaacataagaaacaaccc
tgtccatacggaaaaaagtgcacatatgggcacaaatgcaaatactaccacccagagcgt
gctaaccagtcacagagatcagtagcagatgagttgcgggcttttgccaagttgtctgct
gtgaaaaccatgagtgaaggtgccctggcaaagtgtggcactgggcctgccacagctaaa
ggagagagcagctctgaagtgaaacgcattgctcccaagcgtcagtcagaccccagcatc
cgctcagtggcctgtgagcaagaagaaaggctgtcggcagctcgcaaacctgaggctagc
tctgtgccttctcttgtgtctgctctcagcgtgccaacaatgcagccagccaaaagccac
gctgctggtgccttgaacacccgctccgccagcagccccgtgccgggttcttcacagttc
tctcagtgctcgtcgctggaacacatgtctagtgtgcagtatccacctatcctggtcacc
aacagccatggcacctccatcagctactcggaacaataccccaagtacgacacagggggt
gctgatcacggctactactccatgttgagcgacttctcaaatctgagcctcggcagcatg
cacaactcagacagtttctacagcatggaacaggagcacggcatgtacacaagaaacccc
agcccttgccctgatccttgtattagccattcgagtaacgaatcctcctactcctatggg
gacatgtacatgagttcaggggatggaggtccagaggaaaacgtcaagtgccacctgtcg
ccttctcagaacaggctgcagccattttcccatggctttcacgaggctttaaaaagagtg
cagagttacggacccgacgagcccaaacaggcgccacgcaagcagtcagtttctcatcta
gcgccgcatgtacagcaccccgtggtcggggcccgttcgagctgccctggggactatccc
atacctgagaacgtccacccgtcctcgacttcacagccgagtcgtgctttaggcatgacc
aggatggacagtatatcagactccagactctatgagagcaaccccatgagacaaaggagg
cctccgctgtgcagggagcagcatgccagctgggacccccttccctgtggcactgaatcc
tatgggtaccactcttaccccttaagcagcaacctcatgcagccttactacgagcgcgtg
atggtgcgaagcatgcctgagaagatggaacagacgtggaggtccccatgggaaggcatg
cctgcagagcctcaggaacgccatgttatcccagagcaccagtaccagacctaccgcaat
ctctgcaacattttcccacagtatattgttcactccgttatggagaagaatcctcacatg
acagacccccagcagcttgcagctgtgatagtcaccaagttaaggtctgggcgttaa
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