Polyodon spathula (Mississippi paddlefish): 121318957
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Entry
121318957 CDS
T07273
Name
(RefSeq) TBC1 domain family member 8B-like isoform X1
KO
K19951
TBC1 domain family member 8/9
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121318957
Membrane trafficking [BR:
pspa04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121318957
Endosome - Golgi transport
Rab GTPases and associated proteins
121318957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
GRAM
RabGap-TBC_2
EF-hand_1
EF-hand_7
EF-hand_6
EF-hand_8
Glyco_trans_2_3
EF-hand_5
Motif
Other DBs
NCBI-GeneID:
121318957
NCBI-ProteinID:
XP_041112115
LinkDB
All DBs
Position
7:complement(58917973..58939573)
Genome browser
AA seq
1107 aa
AA seq
DB search
MWLNPEEVLLKNALKLWATERSNDYFVLQRRRGYGEGGGGLTGLLVGTLDAVLDSTAKVA
PFRILHQTPDSQVYWSIACGATREEIEKHWEWLQKNVMSTLSVFDSSEDITSFVQGKIRG
LIAEEGKSSLVKEEDPEKFREALLRFQKWFGLPKKEKLVTYYSCSYWRGRVPCQGWLYLS
TNFLSFYSFLLGAEVKIIISWDEMWKLEKTSTVLLTEGIHVRARGEDYDFSMFLHLSETF
LLMEQLADYSLRRLFDKETFEGDPALRDPLQITKRGLETRARNEQFRAFFRLSRSENLLE
VHESFLWVPFSQFNTLGKICVSESYLCFASQDGSQCYVIIPIREVLRVETPDNGSKALTV
CVRGKRALRFTEVRDFVHLAAKIRRKCGAAASPQHSDSGEVPREVCQALIEHCEDNPEEE
ALMVGQTGSSRAVSTEALMTVFHPQDAENLDPKMLKEKMKEQSWNIHFAEYGRGVSMFRT
SKTRDLIVRGVPEALRGELWMLFSGAVNDMATHPGCYAELVEKSVGTSTLATDEIERDLH
RSLPEHPAFQSDTGISALRRVLTAYAYRNPKIGYCQAMNILTSVLLLYAKEEEAFWLLVA
VCERMLPDYFNHRIIGALVDQAVFEELIGLRLPQLTDHMTDMTFFSSVSLSWFLTLFISV
LPIESAVNVVDCFFYDGIKAVLQLGLAVLDYNMERLLHCHDDAEAVTSLNKFFDNVTNKD
SPLPSTVQQAQVGNDGSKSQVKVDITDLIRESYEKYGDIRSEEVESLRRRNRLYVIHTLE
DTTKQNVLRVVSQEVKFSAGDLDELFELFKKQHFLSCYWSMSCPALTHHDPSLPYLEQYQ
LGSEEFRALYCLLSPWAHCSSRDALALATFRLLDENQDGLVNFKEFCCGLDVMYSGSFTE
KLKFLFKLHLLPALSEPVETGSPMVRKGRTLSKEDLMHLSRLDVSLPGLSQDGVIRKSPE
RGKGKVDLQAYLKQWQDELLKKEESIKDLPRINQSQFIQFSKTLYNLFHGAPEEESLYRA
VTTVTSLLLRMEEVGRRLQGAQGEGSPSHTGTADSTPLREEEEKEWSFAFEQILASLLNE
PVLVRFFEKPEDMRAQLDHARAAQLKA
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgtggctgaaccccgaggaggtgctgctgaagaatgcgctgaagctgtgggcgacggag
aggtccaacgattacttcgttctgcagaggaggcgagggtatggggagggcggaggaggt
ctgacaggtctcctcgtgggcacgctggatgctgtcctcgactccacggctaaagttgct
ccatttcgcatcctgcatcagacacccgactcccaggtctactggtccatagcgtgcggt
gccaccagagaggaaatagagaagcactgggaatggctgcagaagaatgtcatgagcacg
ctctctgtgttcgattccagcgaagatattaccagcttcgtccagggaaaaataaggggt
ctgattgcggaggaggggaagagctccctggtgaaggaggaggacccagagaagttccgc
gaggcgctgctgcgcttccagaagtggttcggcctgccaaagaaggagaagctggtcacc
tattactcctgcagctactggagagggcgggttccctgccagggctggctctacctgagc
accaacttcctcagcttctactccttcctgctcggagccgaagtgaagatcatcatctcc
tgggatgagatgtggaagctggagaagacgtccacagtgctcttgacggagggcatccac
gtgagggcacggggcgaggattatgacttctccatgttcctgcacctcagtgagaccttc
ctgctgatggagcagctggctgactactctctcaggaggctcttcgacaaggagaccttc
gagggagacccagccctgagggacccactgcagatcaccaagcgaggtctggagactcgc
gctcggaacgagcagttcagggcgttcttccgtctttctcgcagtgagaacctgttggaa
gtgcacgagagcttcctgtgggtacccttcagccagttcaacacgctgggcaagatctgc
gtgtccgagagctacctgtgctttgccagccaggatgggagccaatgctacgtcatcatc
cccattcgcgaggttttacgtgtggaaacaccggacaatggcagcaaagcgctcactgtg
tgtgtgcgagggaagagagcactgcgctttacggaggtcagagattttgtgcacctggct
gccaaaatccgcaggaagtgtggggcagccgcgagcccccagcacagcgacagtggagag
gtccctcgggaggtgtgccaggccctcattgagcactgcgaggacaatcccgaggaggag
gcgctgatggtggggcagacgggcagcagcagggccgtgagcaccgaggctctcatgacc
gtcttccacccgcaagacgcagaaaaccttgatcccaaaatgctgaaagagaagatgaag
gagcagtcatggaacattcactttgctgagtatggccggggggtcagcatgttccgcacc
agtaagactcgagacctgatcgtgcgcggcgttcccgaggccttacgaggagaactctgg
atgcttttctcaggcgctgttaatgacatggccacgcaccccggctgttacgctgagctg
gtggagaagtctgtgggcaccagcacactggcgactgacgagatcgagagggacctgcat
cgctccctccctgagcaccctgccttccagagcgacacaggcatctccgccctgcgcagg
gtcctcactgcatatgcctacaggaaccccaagattgggtactgccaggcaatgaatatc
ctgacgtcggtcctgcttctgtatgcaaaagaggaggaagccttctggttactggtggca
gtgtgtgagcgcatgctgcctgattacttcaaccacaggatcattggtgccctggtggac
caggccgtgttcgaggagctgattgggctccggctgccccagctgacggatcacatgacc
gacatgacgttcttctcgtcggtgtccctctcctggttcctcacgctcttcatcagcgtg
ctgcccatcgagagtgccgtcaacgtggtcgactgcttcttctacgacggcatcaaggcc
gtcctgcagctggggctggccgtgctggactacaacatggagaggctgctccactgccat
gacgatgcagaggccgtcaccagcctcaacaagttttttgataacgttaccaacaaagac
agccctctcccatccacagtccagcaggcccaagtggggaatgacgggagcaagtctcag
gtcaaagtggacatcaccgatctcatccgggagtcctacgagaaatatggagacatccgt
tcagaggaagtggagagcctgaggcggaggaacagactgtatgtgattcacactctggag
gacacgaccaaacaaaacgttctcagggttgtctcccaagaggtgaagttcagtgcaggt
gacctggatgagctgtttgagttgtttaagaaacagcacttcctgagctgctactggagt
atgagctgtcctgcgctgacgcaccatgatcccagcctgccttacctggagcagtaccag
ctgggcagtgaggagttccgggcactctactgcctgctgagcccctgggcacactgctcc
agccgggacgccctcgccctcgccaccttccgcctgctggacgagaaccaggacgggctc
gtcaacttcaaggagttctgctgcggactggatgtgatgtacagtggaagcttcacagaa
aaactgaagttcctgttcaagctgcacttactaccagctctctcagaacctgtagaaaca
gggagccctatggttcgaaagggccgcacactttccaaggaagatctgatgcacttgagt
cggcttgatgtgtcgttacctggcctttcccaggatggagtgataaggaagagcccagag
agagggaaaggtaaggttgaccttcaggcatacctcaaacaatggcaggatgagcttctg
aagaaagaagaaagcatcaaggatttacccagaataaaccagtcccaattcattcagttc
tccaagaccctgtataacctcttccacggggcccccgaggaggaatccctgtacagggct
gttaccacggttaccagcctcctcctgaggatggaggaagtggggcgcaggctgcagggc
gcacagggagaggggagcccctcccacacaggcacggcagacagcaccccgctcagggag
gaggaggagaaggaatggtccttcgcgttcgagcagatcctcgcctctctgctcaatgag
ccagtgctggtccggttcttcgagaagcctgaggacatgcgggcccagctggaccacgcc
agggcagctcagctcaaggcctga
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