Polyodon spathula (Mississippi paddlefish): 121319316
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Entry
121319316 CDS
T07273
Name
(RefSeq) pre-mRNA-processing factor 6 isoform X1
KO
K12855
pre-mRNA-processing factor 6
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121319316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121319316
Spliceosome [BR:
pspa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121319316
Complex C
U5 SnRNP specific factors
121319316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
Suf
HAT_PRP39_C
TPR_16
HAT_Syf1_CNRKL1_N
TPR_17
TPR_2
TPR_8
FAT
TPR_CcmH_CycH
TPR_1
ARM_TT21_N
TPR_21
ARM_TT21_C
T7SS_EccA1_N
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
121319316
NCBI-ProteinID:
XP_041112557
LinkDB
All DBs
Position
8:8938942..8957749
Genome browser
AA seq
1038 aa
AA seq
DB search
MASKSTGPPGGGRGGGGGGRGGGGASAGGSGGGRGGGGGGRGGGGASAGGSGGGRGGGGG
GRGGGGASAGGSGGGRGGGGGGGSLTSSLSAAGASTALTGTLKKKKKPFLGMPAPLGYVP
GLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKVEDEEEDLNDTNYDEFN
GYAGSLFSSGPYEKDDEEADAIYSALDRRMDERRKERRELREKEEIEKYRMERPKIQQQF
SDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRHEKLTPVPDSFFAKHLQSGEKNTSVDP
RQAQFDSLNAFPGGLNSPFPGGMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVS
GQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTG
KLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELE
TDVRAKKRVLRKALENVSKSVLLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARL
ETYENARRVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINR
EQWIQDAEECDKAGSVATCQAVIRAVIGIGIEEEDCKHTWMEDAESCISHGALECARAIY
AHALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWQAGD
VPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVK
LEWVLGNIAAAQELCCEALKHYEDFPKLWMMKGQIEEQTENMDKAREAYNQGLKKCPQSM
PLWLLLSSLEEKAGQLTRARAILEKSRLKNPQNPELWLESVRLEYRAGLKNIANTLMAKA
LQECPNSGILWAEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREW
FHRTVKIEPDLGDAWAFFYKFELQHGTEEQQGEVMKRCENVEPRHGELWCEQSKHILNWQ
KKIGEILVLVAAKIKNTF
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgaaatcaacaggaccgcctggcggaggcagaggcggtggcggtggaggcaga
ggcggcggtggtgcctccgccggtggaagtggaggaggcagaggcggcggcggtggaggc
agaggcggcggtggtgcctccgccggtggaagtggaggaggcagaggcggcggcggtgga
ggcagaggcggcggtggtgcctccgccggtggaagtggaggaggtagaggcggcggcggt
ggtgggggtagcttaacttcgagcctgtccgctgctggcgcgtcgacagccctgaccggc
acgctcaagaagaagaagaagccctttctgggcatgccagccccgctaggatatgtgcct
gggctcggcagaggtgctactggtttcaccacacgttctgatatcggtcctgcccgagat
gccaatgacccggtggacgatcgccatgctcctccagggaagaggaccgtgggggatcaa
atgaagaaggtggaggacgaagaggaggatctcaatgacaccaactatgatgagtttaac
ggatacgctggtagcttgttttcaagcggcccgtatgagaaagatgacgaagaggcagat
gctatttattcagcgcttgataggagaatggatgaaaggagaaaagaaagaagggaactg
agagaaaaggaggaaatcgagaagtaccgtatggagcgtcccaaaattcaacagcagttt
tccgatctgaagaggaagctggcagaggtcaccgaggaagagtggctcagtattcctgaa
gttggtgatgcccgaaacaagcggcagaggaacccacggcatgaaaaactgactcctgta
ccagacagcttcttcgccaaacacttgcagtctggagaaaaaaacacatctgtagatccg
aggcaagcgcaatttgatagtttgaacgctttccctggtggtttgaattctccttttccg
gggggaatgacccctggactgatgaccccagggacaggggagctggacatgaggaagatc
ggccaggccaggaacaccttgatggacatgcggctcagtcaggtgtctgattctgtgagc
gggcagacagttgtggaccccaagggttacttgaccgatcttaactccatgatcccaact
catggaggggatataaatgatattaagaaggccagattgctgctgaagtctgtgcgtgaa
actaacccacaccacccccctgcctggattgcctcggcccgactggaggaggtcacaggc
aaactgcaggtcgccaggaacctcattatgaagggcacagagatgtgcccaaagagtgaa
gacgtgtggctggaagcagcccggttgcagcccggggacacggcgaaggctgtggtggcc
caggctgtccggcacctgcctcagtctgtccggatttacatccgagcagccgagcttgag
acagacgtccgggccaagaaacgcgtcctccggaaagccctcgagaatgtttccaagtcg
gtgcttctctggaaagcggctgttgaactggaggagcccgaagatgccaggattatgctc
agcagggctgtagagtgctgcccaaccagtgttgagctttggttggccctcgccagacta
gagacctatgagaacgccaggagagtgttgaacaaagctcgtgaaaacattcccactgac
cgtcacatctggatcactgccgccaagctggaggaagccaatggcaacactcagatggtg
gagaagatcattgacagagcgatcacctctctccgggccaatggagtcgaaatcaacagg
gagcagtggattcaggatgcagaggagtgcgataaggctggcagcgtggcaacttgtcag
gctgtcatcagagcagtgatcggcatcgggattgaagaggaggactgtaagcacacctgg
atggaagacgcagaaagttgcatttcccatggtgccctggagtgcgcacgagccatttat
gcccacgctctgcaggtcttccccagcaaaaagagtgtgtggctgagagcagcatacttt
gagaagaaccatggaaccagggagtctttggaggcattgttacagagggctgtggctcac
tgcccgaaggctgaggtcctgtggctgatgggtgcaaagtcgaagtggcaagcaggtgat
gtccctgcagccagaagcattttggcactggcttttcaggcaaatccgaacagcgaggaa
atttggttggctgctgtgaagcttgagtctgaaaacaatgaatatgaaagagcaagaagg
cttttggcaaaagccaggagcagcgcccccactgcaagggtgtttatgaagtctgtgaag
ctagagtgggtgttgggaaatatcgctgcagcccaggagctttgctgtgaggctttgaaa
cattatgaagacttccctaagctgtggatgatgaaggggcagatcgaggagcagactgaa
aacatggacaaggctcgagaggcttacaaccaggggttgaagaaatgcccgcagtccatg
cctctgtggctgctgctgtccagcctggaagagaaagccgggcagcttaccagagccaga
gccatcctggagaaatcccgtctgaaaaacccccagaacccagagctctggctggagtct
gtaaggctggagtacagagccggtctcaagaacattgcgaacacactgatggctaaggca
ctccaagaatgtcccaactctggaatactttgggctgaagcagtttttcttgaagctaga
ccgcaaagaaagaccaagagtgtcgacgctttaaagaaatgcgaacatgatccccatgtc
ttactggcagttgcaaagttgttctggagtgaacgaaagataaccaaagccagagagtgg
tttcacaggacagttaaaattgagcctgatttgggagatgcctgggctttcttctacaag
tttgaattgcaacatggaactgaggagcagcagggggaggtgatgaagcgctgtgagaac
gtcgagccgcggcacggggagctgtggtgtgagcagtccaagcacatcctcaactggcag
aagaagatcggagagatcctcgtcctcgttgctgcaaaaatcaagaacacgttctga
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