Polyodon spathula (Mississippi paddlefish): 121319326
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Entry
121319326 CDS
T07273
Name
(RefSeq) probable ATP-dependent RNA helicase DHX35
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121319326
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121319326
Spliceosome [BR:
pspa03041
]
Complex C
Other components
Complex C specific factors
121319326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
ABC_tran
AAA_22
Cas3-like_C_2
AAA_19
nSTAND3
AAA_7
AAA_30
Motif
Other DBs
NCBI-GeneID:
121319326
NCBI-ProteinID:
XP_041112576
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All DBs
Position
8:complement(9403259..9416321)
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AA seq
699 aa
AA seq
DB search
MAAPWSTMKFWKPGTEGPGLGLSEEREGTAEVGGSIVYNPYASLSIEKQRQKLPVFKHRN
YILYLLENYQTVVIVGETGCGKSTQIPQYLLEAGWAAEGKVVGVTQPRRVAAVSVAGRVA
EERGALLGHEVGYTIRFDDCSDAHATRIKFLTDGMLVREMMADPLLKKYSVLMLDEAHER
TLYTDIAVGLLKKIQKKRGDLRLIVASATLDAEQFRDFFNLNESGNPSKDTCGILTVEGR
SFPVDVFYTISPVPDYVKATVETVMKIHESEGDGDVLAFLTGQEEVETVVSMLVEQSRAL
SRSGMKKHLRALPMYAGLPYSEQMKVFERVPHTVRKVVVATNIAETSITINGVVFVIDCG
FVKLRAYNPKTAIESLVVAPVSQASASQRAGRGGRNRAGKCYRLYTEEDFEKLPLSTVPE
MQRTNLAPVILQLKALGIDNVLRFSFLSPPPAQSMVQALELLLALGGLDEQGRLTEPLGM
RMAEFPLIPMFAKMLLESGSFGCSEEIVTIAAMMQIQNVFVSPPSQKKAAARKHRKFAVA
EGDHLTMLNVYEAFVKNHRSSQWCQEHFLNYKGLQRAAAVREQLWRLLIKFRVPKKSSEG
DPEVILRCIVSGFFANAARLHHSGAYRTLRDDHELHIHPTSVLYAEKPPKWVVYNEVVQT
SRHFLRDVSAIESSWLVELAPHFYRRGTHSSGSKRTKVV
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccctggtccacaatgaagttctggaaacctggaacggaaggtccaggtctc
ggtctcagtgaggaacgcgaggggactgcagaggtcggcggctctatagtctacaaccct
tatgcctcactgtccatcgagaaacagaggcagaagcttcccgtgttcaagcacagaaat
tacatcctgtacctgttggaaaactatcaaactgtggtgatcgttggagaaacaggatgt
gggaaaagcactcagattcctcagtatctcctggaggctggatgggctgcagaggggaaa
gtggtgggagtgacccagccacgaagggtggctgcagtctctgtggctggccgtgtggcc
gaggaaagaggggcattgctgggccatgaggttggatacacaatacggtttgatgattgt
tctgatgcccatgccacacgcatcaagttcctgactgatggaatgctggtgagagaaatg
atggcggatcctttattaaagaaatacagtgtcctgatgcttgatgaggctcatgaacga
accctctacacagacatcgctgtcggacttctcaagaagattcagaagaaacgcggagat
ctgcgactcattgtggcgtcagctactctagatgctgagcaatttcgggatttctttaac
ctgaatgagtctggaaaccccagtaaggatacctgtgggattctaacagtggaagggagg
tcattccctgtggatgtcttttatacaataagcccagttcctgactatgtgaaggccaca
gtggagacggtgatgaagatccacgagtctgaaggagatggggacgtcctggcattcctc
actgggcaggaggaggtggagacagtggtgtccatgctggtagagcagtcccgggccctg
tcccgctcggggatgaagaagcacctacgagctcttcccatgtacgccggcctgccctac
tctgagcagatgaaggttttcgagagggtgccccatactgtgcgcaaggtggttgttgcc
accaacattgcagagacctccatcactataaacggcgtggtgttcgtcattgactgcggg
tttgtgaagctgagggcctacaatcccaaaacagccatcgagtccctggtagtggctcct
gtctcccaggcatcggccagtcagagagcaggaagaggcggcagaaaccgggccgggaag
tgttaccggctgtacacagaagaagactttgaaaagttacccctgtcgacagtccccgag
atgcagcgcactaacttggcccccgtgatcctgcagctgaaagccctggggatagacaac
gttctgaggttcagcttcctgtctcctccccctgcccagtccatggtacaggctctggaa
ctgctccttgcacttggagggttggatgagcaaggccgactgactgagccactgggaatg
cggatggctgaattccccctcattcccatgtttgcgaagatgttactggaatcggggagt
ttcggctgctctgaagagattgtgaccatcgcagccatgatgcagatccagaacgtgttc
gtctctcctcccagccagaagaaggcagctgccaggaagcacaggaagtttgccgtggca
gaaggggaccatctgaccatgctgaatgtttatgaagccttcgttaagaatcacaggagc
tcgcagtggtgccaggaacacttcctcaactacaaagggctgcagagagctgcagctgtg
agggagcagctctggagactgctgatcaagttcagagtccccaagaagtccagcgaaggt
gacccggaggttattctgcgctgcatcgtctcggggttctttgccaacgcggccaggctt
caccattcaggggcgtacaggacgcttcgagatgaccatgagctgcatattcatcccacc
tctgtgctctacgctgagaagccacctaaatgggtagtgtacaacgaggtggtgcagaca
tccaggcacttcctgcgggacgtgtctgcaatagagtcctcttggctggtggaactggcc
cctcatttttaccggaggggaacgcattcatcgggttcaaagagaacaaaagtagtttga
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