Polyodon spathula (Mississippi paddlefish): 121319358
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Entry
121319358 CDS
T07273
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121319358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121319358
03036 Chromosome and associated proteins [BR:
pspa03036
]
121319358
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121319358
Coactivators
SAGA/TFTC/STAGA complex
121319358
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
121319358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
tRNA-synt_1c
Motif
Other DBs
NCBI-GeneID:
121319358
NCBI-ProteinID:
XP_041112648
LinkDB
All DBs
Position
8:complement(10683553..10700214)
Genome browser
AA seq
1023 aa
AA seq
DB search
MAAGSELLDEVFFNTEVDEKVVSDLVGSLESQLAGSGHGNCENRGPVVGNHIVSAGVGGN
ANVQDSKMGLAQDLAKAGAGVQGGVINNTRSQGSAILHATTGVTSSAGSETSLGLSHGKS
VVVSAMATPVPNHGAGSGKTGTSALQTLNGSNVTMNSHGSGSTAATFAGTPAAASTICNS
SGSAPAVTAVNNGPGSVVKGNVNTVLPATSNTVIQTSFFNAQSATSTVITSQTTTLATGP
TVTLVRPPVHTTGPGTTQNGNNTVLSSTFNIGNLPATVGSGISLQTSLVNSNPSPASVGT
SIATHVMKSESPKTIIQTTPQALAPSVVANAGNLSLGQPMHSGLQTVPPQQPCVPAGISK
GPVVQNVPRTSTPAAVATSPGAIRAIVPQVLAPRMAQTPQNQPNIQNIQLPPGMVLVRSD
SGQLLMIHQQTLAQMQAQSQSQNAMTPRPATPTSTPPVQLQAPGTPMIARQVTPTTIIKQ
TSAAQTTVQSTTTLQRPPVVQPQIVLSGVSSTASMGAASPVQPGTPQRTVAGTTGATATE
TLENVKKCKNFLSTLIKLASSGKQSSETAANVKELVQNLLEGKIEAEDFTSRLYRELNSS
PQPYLVPFLKRSLPALRQLTPDSAAFIQQSQLQQPSSQTSTALTAVVLGSSVQHSAGKAT
ATLTSTPQPGHTKPGQLTPLVLQSQQQGTMVRPSQVTLTQTPMVTLRQPHNRIMLSTPQH
VQLKPLQAVPVVKHTVLPGNKGLPPGFTQASAAQKKKLNEAAGGSFRDDDDINDVASMAG
VNLSEESARILATNSELVGTLTRSCKDEAFLSTASLHRRLLEIGKKFGIIELGPDVVNIV
SHATQQRLQSLIEKVTEIAQQRNIVYKEDERYEQISDVRSQLKFFEQLDQIEKQRKEEQE
REILMKAAKSRSRQEDPEQLRLKQKAKEMQQQELAQIRQRDANLTALAAIGPRKKRKVGS
PGPGAGAEGSGSSGSLSGSPSVAAARQFTRQRITRVNLRDLLHCLENESETSHSHLLYQA
FLK
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggctccgagttgctggatgaggttttctttaacacagaggtggacgagaaa
gtagttagcgacttagttgggtccctggagtctcagcttgcgggttcgggtcacgggaac
tgcgagaatcggggcccggtcgtggggaatcacattgtcagtgcgggagtaggaggtaat
gctaatgtccaagatagcaaaatgggacttgcacaagacctggcgaaagcaggggctgga
gtgcaggggggtgttattaataatacaaggtcccagggttcagcgatactacatgcaaca
acaggggtcacttcatctgcagggtctgagacatcgttaggactcagccacggcaagtct
gtggttgtcagtgccatggcaacccctgtgcccaaccacggagcgggcagcggcaaaacc
gggacgtctgcattgcaaactttgaatgggagtaatgtaacgatgaactctcacggttca
ggaagtactgcagccactttcgctgggacgccagcagccgccagtactatttgcaacagc
agcggcagtgcacctgctgtcacagcggtcaacaacggacctggatcggttgtaaaagga
aatgtaaatactgttttacctgccacctcaaacactgtcatccagacctctttttttaat
gcacagagtgctacttcgactgtaattacgtctcagacaacgactttggcaaccggacct
accgtaacacttgtgaggccccctgtgcacacaaccggaccgggcacgacgcaaaatggg
aataacaccgttttaagttcgacctttaatataggtaacctgcctgctaccgtgggatct
gggatatcgttacagacttctcttgtaaacagcaacccgtccccagcaagcgtgggtacc
agcattgcaacgcacgtaatgaagtcggagtctcccaaaactatcatacaaactacaccg
caggcactggcaccaagtgttgttgcaaatgcaggcaatttgtctcttggtcagcctatg
cactccgggcttcagactgtgccccctcagcagccctgcgtacctgcaggaatcagcaag
ggtccggttgtccaaaacgtaccgaggacttccactccagcagcagttgctaccagtcct
ggcgcgatacgagcaattgttccacaggttttagccccccgcatggctcaaacaccacaa
aatcagccaaacatccagaacatacagctgcctccagggatggtgctggtgcgcagtgac
agcggccagttgttgatgatccaccagcagactcttgctcaaatgcaggcccagtcccag
tcccagaacgccatgactccgcgccccgccacgccaaccagcactccccctgtccagctg
caggcccctgggacacccatgattgccaggcaggtgacgccaacgaccatcatcaagcag
acctctgcagcccagaccacagtgcagtccactaccacactacagagacctcctgtcgtg
cagccccagattgtgctaagcggggtctcctcaaccgcttcaatgggagcagcgtccccg
gtgcagccaggaacaccacagagaacagtagcggggaccacaggggccactgccacggaa
accttggaaaatgtgaaaaaatgtaagaactttctgtcgacgttaattaagctggcatca
agtggaaaacagtcctcagagacggctgctaatgtgaaggagctggtgcagaacctgttg
gaaggaaaaattgaagcagaagattttacaagcaggctttacagggaactcaattcttca
cctcagccatatcttgtgcctttccttaagaggagtctgcctgctttgcgccagctcacc
ccagactctgcagctttcatccagcagagccagcttcagcagcccagcagtcagaccagc
acggcactcacagcggtggtcctggggtcgtcggttcaacactcagccggaaaagccact
gccacactcaccagcaccccccagcctgggcacaccaaaccagggcagctcacaccattg
gttctccagtcacagcagcaggggactatggtgcgcccatcccaggtaaccctgacacaa
acccccatggtgactctgaggcagccccacaatcggatcatgttgagtacgccacagcat
gtgcagctgaaacctcttcaggcagtccccgttgtgaaacacaccgtattacctggaaac
aaagggcttccccctggcttcacacaggcctctgctgctcagaagaagaaactcaacgaa
gctgcaggaggctccttccgtgacgatgacgatattaacgatgtcgcatcaatggctgga
gtgaacctgtctgaagaaagcgccaggattctcgcgacgaactcggaactcgtgggcacg
ctaacgaggtcttgtaaagacgaagcatttctctcgacagcgtcgttacacagaagacta
ttagaaataggcaaaaaatttggaataatagaactggggccagatgtagtcaacattgtg
tcacacgcaacacagcaaaggttacagagcttaatagagaaagtaacagagattgcgcag
caaaggaatatagtatacaaggaagacgagcgctacgaacagattagtgatgtgcggtca
cagctgaagttcttcgagcagctcgaccagatagagaaacagaggaaagaggagcaggaa
agagagattttaatgaaagcagcaaagtcacggtcacgtcaagaagacccagaacagctc
cggttgaaacagaaggccaaagagatgcaacagcaggagctggcacagataagacaaaga
gacgccaacctcacagccttagcagcgataggaccgagaaagaagaggaaagtgggttca
cctggaccaggggctggagcggagggctctggttcaagtgggtcgctttcaggcagccct
tcagtcgccgcggcgaggcagttcactcgacaacgaatcacacgggttaacctcagggac
ctcctgcactgtttggaaaacgagagcgagacaagccattcacatctgctgtaccaagca
ttcctgaagtag
DBGET
integrated database retrieval system
