KEGG   Polyodon spathula (Mississippi paddlefish): 121319400
Entry
121319400         CDS       T07273                                 
Name
(RefSeq) cleavage stimulation factor subunit 1-like
  KO
K14406  cleavage stimulation factor subunit 1
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    121319400
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pspa03019]
    121319400
Messenger RNA biogenesis [BR:pspa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     121319400
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 CSTF1_dimer Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_TEP1_C NBCH_WD40 Beta-prop_Aladin Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_VPS8 Ge1_WD40 Beta-prop_NWD2_C Beta-prop_SPT8 Beta-prop_DCAF12 Frtz DUF7099
Other DBs
NCBI-GeneID: 121319400
NCBI-ProteinID: XP_041112741
LinkDB
Position
8:complement(11846306..11850062)
AA seq 431 aa
MYRPKATLRDRQHLYRLIISQLLYDGYTNIANCLIGEVKPPTVVSPSEQLLQLAKLGMEN
DDTAVQYAIGRSDTVAPGTGIDLEYDADMQTMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYVQEAEMLRSISFHPSGDFLLVGTQHPT
LRLYDVNTFQCYVSCNPRDQHTDTISGVSYNPSANSYVTCSKDGSIKLWDGVSNRCVVTF
DKAHDGAEVCSAVFSKNSKYILSSGKDSVAKLWEISTGRPLVKYTGAGLSGRQMHRTQAV
FNHTEDYVLLPDERTISLCCWESRSAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRTTTD
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgtaccgaccaaaggccacgctcagagaccggcagcatctctacagactcataatcagc
cagctgctatacgatggctacaccaacattgccaactgcctcatcggagaggtgaagccc
ccaactgtggtctcgccatctgagcagctgctgcaactcgccaaactggggatggaaaac
gacgacaccgcggtgcagtatgcaatcgggcgctcggacacagtggctcccggtactggg
attgacctggaatatgacgctgatatgcagaccatgtcccctgaagcctcggagtatgag
acctgctacgtcacctcccacaaggggccctgccgcgtggcaacctacagccgagatggg
cagctcattgccaccggctcagcagacgcctccatcaaaatcctggacacggagcgcatg
ctggccaagagtgctatgcccattgaggttatgatgaatgagactgcccagcagaacatg
gagaaccatcctgtcatccgcacgctgtacgatcacgtggacgaggtcacctgcctggct
ttccaccccactgagcagatcctggcatcagggtcccgcgactacacactcaaactcttc
gactactccaagccctctgccaagagagcctttaaatacgtacaggaagcagaaatgctg
cgttccatctccttccacccttcgggggacttcttgctggtgggcacgcagcatccgacc
cttcgcctgtacgacgtcaacaccttccagtgctacgtgtcatgcaaccctcgcgaccag
cacaccgacaccatctcgggcgtcagctacaacccgagtgccaacagctacgtcacctgc
agcaaggatggcagcatcaagctgtgggatggcgtgtcgaaccgctgcgtggtcaccttc
gacaaggcgcatgacggggcagaggtctgctcggctgtcttctccaagaactccaagtac
atcctgtccagcggcaaggactccgtggccaagctgtgggagatctccacgggccgccct
ctcgtcaagtacacgggcgctggtttgagcggtcggcagatgcaccgcacccaggcggtg
tttaaccacactgaggattacgtgctgctgccggacgagagaaccatcagtctttgctgc
tgggagtctcgttcggctgagaggaagaaccttctctccctgggacacaacaacattgtg
cgatgcatcgtccactcgcccaccaaccccggcttcatgacctgcagtgacgacttccgt
gcgcgcttctggtaccgcaggaccaccacggactga

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