Polyodon spathula (Mississippi paddlefish): 121319433
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Entry
121319433 CDS
T07273
Name
(RefSeq) RNA-binding protein 39-like
KO
K13091
RNA-binding protein 23/39
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121319433
Spliceosome [BR:
pspa03041
]
Common components
Common spliceosomal components
General mRNP proteins
121319433
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RSRP
RRM_occluded
RBD_DEAH11
PRP38_assoc
RRM_7
Ig-CFAP74_2
Motif
Other DBs
NCBI-GeneID:
121319433
NCBI-ProteinID:
XP_041112800
LinkDB
All DBs
Position
8:complement(12759412..12768773)
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AA seq
536 aa
AA seq
DB search
MADDFDIEAMLEAPYKKDENKSSSANCHEERSKKKKKSKSRSRSRDRKRSKSRDRKKSRE
RKTSKSRERKRSRSKERRRSKSRSRERGGRYRVRRSPFAGPKFNGGTRGKIGPPPTIKLS
RRRSRSKSPFKKDKSPVRWVKCDNWGLLSLRACHCMQLAARIRPRDLEEFFSAVGKVRDV
RMISDRNSRRSKGIAYIEFVEASSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAALANNL
QKGNAGPMRLYVGSLHFNITEEMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDAE
CAKKALEQLNGFELAGRPMKVGHVTERTDASNASSFLDSDELERTGIDLGTTGRLQLMAR
LAEGTGLQIPPAAQQALQMSGSIAFGAMAAVTDLQARLTQPPDAAMNPGLNLALNLNPAM
TLPTQPLATQCFQLSNMFNPQSEDDPEWDVEIQDDVIEECNKHGGVVHIYVDKSSPQGNI
YVKCPAISAAMAAVSGLHGRWFAGKMITAAYVPLATYHNLFPESVMATQLLMPIRR
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgatttcgatattgaagccatgcttgaggctccttacaagaaggatgagaac
aagtcgagtagtgccaattgtcatgaggagcgcagtaagaagaaaaagaagagtaaaagt
cgcagcaggagccgcgacaggaagaggagcaaaagtcgggatcgtaagaagagccgcgag
agaaagacgagcaagagtcgtgagaggaagcgcagccgtagcaaggaacgccgccgcagc
aagtcacgaagcagagagaggggaggccgataccgagtgcgcaggagtccatttgctggg
ccgaaatttaacggtggcaccagagggaagattggcccaccacctaccatcaaactaagt
aggagacgttctagaagcaaaagcccatttaagaaagacaagagtcctgtgaggtgggta
aaatgtgataattggggacttctttctctacgtgcctgtcattgtatgcagctggcagca
agaattcgaccacgagatctggaagagttcttttcagcagtgggaaaggtgagagatgtg
aggatgatttctgacaggaactcgagaagatcaaaggggattgcttatatagaatttgtg
gaagcaagttctgtgccactggcaattggccttactggtcaaaggctgctgggagttcca
atcattgttcaagcatcacaggctgagaagaacagggcagcagctttagccaacaactta
caaaagggtaatgctggaccaatgagactctatgtgggatctctgcacttcaatatcact
gaggaaatgctgcgaggaatctttgaaccttttggcaggattgaaagtattcagttgatg
atggacagtgaaactggacgttcaaaaggatatggcttcattacattttcagatgcagaa
tgtgctaaaaaggctttggaacagttgaatggatttgagctggctggcagacctatgaaa
gtgggacatgtgactgagcgaactgatgcatcaaatgcaagttcattccttgatagtgac
gagctggaaagaactgggattgaccttggaactactggtcgtttgcagttgatggccagg
cttgcagaaggtactggtttacagatcccaccggcagcacaacaggcccttcagatgagt
ggatcaatcgcctttggtgctatggcagcagtaacagatttacaagccaggcttacccaa
ccacctgacgctgctatgaatcctggcttgaacttagcccttaacctgaaccctgctatg
accttaccgacacagcctcttgcaacacagtgcttccagctgtccaatatgttcaaccct
cagtcggaggatgatccagaatgggatgtagagattcaagatgatgtgattgaagaatgc
aataaacatggaggcgtggtacacatttatgttgataaaagttcaccacaaggaaatatt
tatgtgaaatgtcctgctatttctgctgccatggctgctgttagtggattacatggacga
tggtttgctggtaaaatgatcactgcagcgtatgttccacttgcaacctaccacaacctt
ttcccagagtccgtgatggctactcagctgctgatgcctattcgacgatga
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