Polyodon spathula (Mississippi paddlefish): 121319523
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Entry
121319523 CDS
T07273
Name
(RefSeq) RNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pspa03016
]
121319523
Enzymes [BR:
pspa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
121319523
Transfer RNA biogenesis [BR:
pspa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
121319523
Prokaryotic type
tRNA splicing ligases
121319523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
121319523
NCBI-ProteinID:
XP_041112975
LinkDB
All DBs
Position
8:16366474..16382193
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIGKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDNPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPSKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIYS
QEGQDYLKGMAAAGNYAWVNRTSMTFLTRQAFAKVFTTTPDDLDMHVIYDVSHNIAKVEE
HVVDGKQRTLLIHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRSKSRRNLDFQDVLDSLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagctacaatgacgagcttcaatacctggataaaatcggtaaaaactgctgg
cgcatcaaaaaagggtttgtcccgaacatgcaggtggaaggggttttctatgtgaatgac
ccgctggagaagctgatgtttgaggagctcaggaacgcctgtcgagggggagggtttggt
ggctttcttcctgctatgaaacagattggcaatgtggctgcattacctggaattgttcac
aggtccattggtctgccggatgtgcactctggttacgggtttgctattggaaacatggct
gcctttgacatggacaaccctgatgctgtggtctcaccaggtggtgtggggttcgatatt
aactgtggagtccgactgctgcgtacaaacctggacgaaggcgacgtgcagccggtcaag
gaacagctcgctcagtccatgtttgaccacattcccgtgggagtgggatccaagggcgtc
atccccatgaacgccaaggatctggaggaagcgctggagatgggggtggactggtccctg
cgagagggctatgcctgggcggaggataaggagcactgtgaggagtatggcaggatgctg
caggctgaccccagcaaggtctcctccaaggccaagaagagggggctcccgcagctgggg
acccttggcgctggaaatcactacgctgagatccaggtggtcgatgagatttacaacgac
tacgctgccaagaagatgggcattgatcacaagggccaggtgtgcgtcatgatccacagc
ggcagcagggggctcgggcatcaggtggccacagatgccctggttgcgatggagaaggca
atgaagagagacaagatcatagtgaacgatcggcagctggcttgtgcccggatctactcc
caggagggtcaggactacctgaagggcatggctgcagctgggaactacgcctgggtcaac
cgcacctccatgaccttcctaaccagacaggccttcgccaaagtgttcaccacgacccct
gatgacctggacatgcacgtgatctacgacgtgtcccacaacattgccaaggtggaggag
cacgtggtcgatgggaagcagcgcacgctgctgatccacaggaaggggtccacaagggcc
ttcccgccccaccaccccctcatcgccgttgactaccagctgactgggcagcctgtcctg
attggaggcaccatggggacgtgcagctacgttctgaccggtaccgagcagggaatgacc
gagacctttggaaccacctgccatggagctggtcgagcgctgtcccgttcaaaatcgcga
cgcaacctggatttccaggatgttttggacagtcttgcagacaagggtattgcgatccgt
gtcgcctcccccaaactggttatggaagaggctcccgaatcctacaaaaatgtaacagat
gttgtgaacacttgccatgatgcagggatcagcaaaaaagcaatcaaactgcgacctatt
gcagtcatcaagggttga
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