Polyodon spathula (Mississippi paddlefish): 121319538
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Entry
121319538 CDS
T07273
Name
(RefSeq) pumilio homolog 3-like
KO
K14844
pumilio homology domain family member 6
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121319538
03009 Ribosome biogenesis [BR:
pspa03009
]
121319538
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
121319538
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
121319538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPL
PUF_NOP9
GmrSD_N
Motif
Other DBs
NCBI-GeneID:
121319538
NCBI-ProteinID:
XP_041113000
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All DBs
Position
1:49228841..49326574
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AA seq
649 aa
AA seq
DB search
MLQMETREEVGTMELKNKKITERVGKMSTGEGHAKQFKDSKPPGKFKSKEAGEGKWNRSN
TFEKGNKKSEKMGEKRGMKKFTGKKKSDQFTKKRKQEQDEEEGSEAKKPKWDEFKKNKKE
LKQNRQQNEKKNNYYIINRSKQVWEAVRRKDCDKEKRLKLMSELQELIRGKIKSIAFAHD
STRVLQCYIQFGNDKQRQEVFEELKEHLVELSKSKYARNIVKKFLMYGNKQQVSEVMNSF
KGQVRKMLRHAEASTVVEYAYNDKAILEQRLMLTEELYGNTFQLCKSAICPTLDKVLEAN
PEKQASIMEEMKQILTPMSHKEAVVKHSLVHKVLLDFFIHAPAKLKTEMIEAIREAVVYM
LHTHNGARVAMHCLWQGTPKDRKVIVKTMKTYIEKIAIGEFSHLVLLAAFDCIDDTKLVK
QLIISEIISSLPIILNNKYGKKVLLYLLSPRDPAHFLPEIIKVLQQGDGNAYSKKDVHTR
QHELLEAISPPVLQHLQENARAVVMDKATSVVVADILGAAVGDLQPAMDSVADLAAEEFI
PGGKGGELHMAEHPAGHLVLKWLIEQDLKMKELGKKECFSRTLLEHVGIEKLKTWATVNR
GAIVLCCLLRSADEDVASKVKDALKLLICKLKKIENAKGVEALLEKLTG
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgttgcagatggagacacgtgaagaggttggaacaatggaactgaaaaataagaaaatt
acagaaagagttgggaagatgtctactggggaaggtcatgctaaacaatttaaagattct
aaacctccagggaagttcaaaagcaaagaagcaggagaaggaaaatggaacagatccaat
acatttgagaaagggaacaagaagtctgagaagatgggagaaaagaggggcatgaagaag
tttactggaaaaaaaaagtctgaccaatttacaaaaaagagaaaacaggaacaggatgag
gaagaaggttcagaagcaaagaagccaaagtgggatgaatttaaaaaaaacaagaaggaa
ctgaagcaaaacaggcaacagaatgaaaagaagaacaattattatatcataaacagatct
aagcaggtctgggaagctgtcaggagaaaagactgcgacaaggagaagaggttgaagctg
atgagtgaactacaggagcttattcgaggcaagattaaaagtattgcctttgcacatgat
tcaaccagagtgctccagtgttacatccagtttggaaatgacaagcaaagacaggaggtt
tttgaggagttaaaagagcatctggttgaactaagcaaatcaaaatatgcaagaaatatt
gttaagaaattcttaatgtatggtaacaaacagcaagtttctgaagttatgaacagtttc
aaagggcaggtgagaaaaatgctgcggcatgccgaggcctcgacagtagttgagtatgcg
tacaatgacaaagccattctggaacagcgactgatgttgacagaggagctctatggaaat
acattccagctttgcaagtctgctatttgcccaacacttgacaaggtgctggaggccaac
cctgaaaagcaagcaagcatcatggaagaaatgaaacagatccttactccaatgtctcac
aaggaggccgttgtaaaacactcattggtacacaaggtgcttttggacttcttcattcat
gctcctgccaaattaaaaacggaaatgattgaagccattagggaagctgttgtatacatg
ttgcacacacacaatggagcaagagtagccatgcactgtctttggcaaggaacccctaaa
gacaggaaagttattgtaaaaacaatgaagacctacatcgaaaagattgccattggggag
ttttctcacttggtcctcctggcagcattcgattgcattgatgatacaaagcttgtaaag
caattgatcatttcagagatcatcagttccctacctattatcctaaacaataaatacggg
aagaaggtgctgctgtatttactgagtcccagagatcctgcacatttcctaccagagata
atcaaagtcttacaacagggagatggaaatgcttacagtaagaaggatgtgcatacacgg
cagcacgagctgctagaggccatatcccctcccgtcctccagcacctgcaagagaacgca
cgtgcggtggtgatggacaaagctacaagcgtggttgttgcagatatcctcggcgctgct
gttggagacctgcagccagccatggactctgttgctgatctagcagcagaggagttcatt
ccaggaggcaaaggaggagagcttcacatggcagagcaccctgcagggcacttggtgctg
aagtggttaattgaacaagatttgaagatgaaagagcttgggaaaaaagaatgcttttca
agaacattgctggagcatgtaggaattgagaaattgaagacatgggccactgtaaatcgt
ggagctattgttctttgttgtcttctccggagtgctgatgaagatgttgccagtaaggtc
aaggatgctctgaagttactcatatgcaagttaaagaaaattgaaaatgcaaaaggagtg
gaggctttgctggaaaaattaactggataa
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