Polyodon spathula (Mississippi paddlefish): 121319613
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Entry
121319613 CDS
T07273
Name
(RefSeq) decorin-like
KO
K04660
decorin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04350
TGF-beta signaling pathway
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121319613
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121319613
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pspa00535
]
121319613
Proteoglycans [BR:
pspa00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class I
121319613
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GFIT
Motif
Pfam:
LRR_8
LRR_4
LRRNT
LRR_5
LRR_9
LRR_14
LRR_LRWD1
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
121319613
NCBI-ProteinID:
XP_041113146
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Position
8:complement(23360354..23377821)
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AA seq
368 aa
AA seq
DB search
MNSTILLLLLATVAWAKPFHQTGFLDFMLEDEGSGRNESDEKILDPVPPIERAGVPEGPV
CPFGCQCHLRVIQCSDLGLKNVPADIPSDTSLLDLQNNKITEIREFDFKNLKILHALILV
NNKITTIHPKALIPMEKLQRLYLSKNFLKEMPVNMPKNLQELRIHENEIAKIKKSSFEGL
TQVIVMELGTNPLKSVGIENGAFQDLKKLSYIRISDTNITAIPKGLPSSLSELHLDGNKI
TKVEADSLKGLNNLNKLGLSFNHISSVENATLVHVPHLRELHLDNNALVSVPPGLPEHKY
IQVIYLHNNKIAAVGTEDFCPPSYNTKKAMYSGISLFSNPVPYWEVQPITFRCVFDRSAI
QLGNYRKK
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgaactcgaccatccttctcctgctgttggccacagttgcctgggcaaaaccctttcac
caaacaggcttcctcgatttcatgttggaagatgaggggtctggaagaaatgaaagtgat
gaaaagatattagatccagtgccaccaattgagcgagcaggtgtacctgaagggccggtc
tgtccctttggatgccagtgccatctccgggtgatccagtgctcagatttaggtctgaag
aatgtaccggctgacatcccctctgatacatctcttctcgacttgcagaacaacaaaatc
actgaaatcagagagtttgacttcaagaacctaaagattttacatgctctgatcctcgtc
aacaacaaaatcacgaccatacaccccaaagctttaatccccatggagaaactgcagaga
ctctacctgtctaagaacttcctgaaggagatgccagtcaacatgcccaagaacctgcag
gagctgcgcattcacgagaatgagatcgccaaaattaagaaatcctcattcgaagggttg
acccaagtcattgtaatggagctgggaacaaacccactgaagagtgtaggaattgaaaat
ggagccttccaagacctgaagaagctgtcctacatccggatttcagacaccaacatcaca
gccattcctaaaggtctccccagctcattatctgagctccatctggatggcaacaaaatc
accaaagtagaagctgacagtctcaagggtctcaacaatctcaacaagcttggtctgagc
ttcaaccacatcagctcagtggaaaatgcaactcttgttcatgtcccccacttgagagag
ctgcacctggataacaatgctctcgtcagtgtgccccctggcctgcccgagcacaagtac
atccaggtcatctacctccacaacaacaaaattgctgcagttgggacggaagacttctgc
cctccaagctacaacacaaagaaggccatgtactctggtatcagccttttcagcaaccct
gttccatactgggaggtccagcctataaccttccgctgcgtcttcgatcgttctgccatt
cagcttggaaactacaggaaaaaataa
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