Polyodon spathula (Mississippi paddlefish): 121319640
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Entry
121319640 CDS
T07273
Name
(RefSeq) caprin-2-like
KO
K18744
caprin-2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121319640
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
121319640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caprin-1_C
Caprin-1_dimer
C1q
Motif
Other DBs
NCBI-GeneID:
121319640
NCBI-ProteinID:
XP_041113203
LinkDB
All DBs
Position
8:24570573..24584432
Genome browser
AA seq
1036 aa
AA seq
DB search
MVQLAPSPVPCLSPTDQADEKKMAVKTKKQGSPKSEAHLALTSLQVAVAASTTTYQGYDT
YIEDGLVSLKHKIRNIEKKKIKLEVYRQRRQEGELLNQDQLEAVEKYDEVIHNLAFAKEL
QKTFSSLSQDLLKAQKKAVRREQVLKIETEKRRLRTILQVQYILQNLQEEHVRKDFHSGL
NGAPFLSASELDYLLKFSKLASLMRDEQMSLEDQMEQATSYLWELLEGGEKVVVGTTYKH
LKAQMAKMMDCGYFDHIPVPQSKMLEEVEEVHKVVEEKTEPLRKLPKEGTKELVKVLGEP
SVQFIQTREVQLREFNRRYLPETDFHSQVKTKTLQPWKADFAAMKQEPPDSWEMQFDDSR
TTSPQPVPTKQGRAAAEHVAKEQVESKMTTTSPKKKREQKPKTGEEVKPVPKPIHSPIAV
FNSTSSLPKDPALRRQKIQDLMAQIQGSFSFMQDSVLDCESSPVSAMPLLAPLSVLPSST
PIAPRESKQKIQADLLPQALQTAPSADRSPSTSLNGDRSLNGPEIDFASAAAQETISALP
EAKSFVSPPAIYQTASIPAPLVEKGMDQTRVPLPCEQQMPLCNTMSAPELQTQAFQSPPT
SNHTLSMSAAPFQAMHTIFKVNAPLPPRDMKPETSSYSESYNQSCSTASTQTTLQCSSQP
AYTLDQNTIPHETLQPGKTNAFLICWSVCGGVMNLGFCFNIHKGFINGVFWCLTFTCCFA
CFISPPPLSTVTTYQSECPVSNGCQVYMSPGQQNAFPRSNQAYYNNRGTIRGTPRGSRGL
ANSYRSPSGYKAGFDGYRGGMQSPGGNYTHQLYPAREYTTMLYGSREAGFQQNYKRGGPA
GQKTNSRAGWSDSSQVSSPERDHETFNSVDSGHGGSRCITPIDIPVTSQATTLMPVHVYP
LPPQMRVAFSAARTSNFAPGTLDQTIAFDLLLNNLGETFEMHMGRFSCPANGTYVFIFHM
LKLAVNVPLYVNLMKNEEVLVSAYANDGAPDHETASNHAVLQLYQGDQIWLRLHRGAIYG
SSWKYSTFSGYLLYQD
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggtgcagcttgccccttcccctgtaccttgcctctcccctacagaccaggcagatgag
aagaaaatggcagtcaagactaagaagcagggaagccccaagtctgaggcccatcttgct
ctcacctcactgcaggtggctgtggctgcttctacaacaacttaccagggctacgacacc
tacatagaggatgggctagtcagccttaaacacaaaatcagaaacattgaaaaaaagaag
attaagctggaggtctataggcagcgtcggcaggaaggagaacttcttaatcaagatcag
ctggaggcagtggaaaagtatgatgaagtcattcataatttggcatttgccaaggagctg
cagaagacatttagttctctgagtcaagatctgttaaaagcccagaagaaggcagtgcgg
cgcgagcaggttttgaagattgaaacggagaagcgccgcctgcgcaccatcctccaggtg
cagtacattctgcagaacctgcaggaggagcatgtgaggaaagacttccacagcggcctc
aatggggccccctttctctctgccagtgagcttgactacctcctgaagttctccaaactg
gcctccctgatgcgcgatgagcagatgagcctggaggaccagatggagcaggcaacaagc
tacctttgggagttacttgaaggaggagaaaaagttgtggttggtactacctataaacac
ctgaaggcacagatggcaaaaatgatggactgtgggtactttgaccacattcccgtccct
cagagtaagatgttggaggaggtggaagaggttcataaggtagtggaagaaaaaacagaa
ccactaagaaagctgccaaaagagggcacaaaagagctggtgaaagtgctaggagaacct
tctgtgcagtttatacagacgagagaagttcagttaagagagtttaacagacgctacttg
cctgaaacagacttccacagccaagtaaagacaaagaccctgcagccctggaaagctgat
tttgcagctatgaaacaggagcctcccgactcttgggagatgcagtttgatgacagcagg
acgacatccccacagccagtgccaaccaagcaggggagagctgctgctgaacatgttgca
aaagagcaagtggagtccaaaatgacgaccacttcaccaaaaaaaaaacgtgagcagaag
cccaaaacaggtgaagaagttaaaccagtgccaaagccaatacattcccccatagctgtg
ttcaattccacttcctcccttccaaaggacccagcactaagaaggcagaagatacaagat
ttgatggctcagatccaagggtcattcagttttatgcaggactctgtgctggattgtgag
agttcacctgtgagtgccatgcccctgttagcaccgctttctgtgcttccctcgtccacc
cccatagcaccaagagaatcaaagcagaaaatacaggcagacctccttccgcaagccttg
cagactgccccttcagctgatcgcagtcccagcactagcctgaatggagatcggtcactg
aatggacctgaaattgacttcgcttcggcagctgcacaagaaactatttcagcattgcct
gaggcaaagtcctttgtttctcctccagcaatatatcaaactgcatcaatcccagccccc
ttggtagagaagggcatggaccagactcgggtgcctctgccatgtgaacagcagatgccc
ctttgcaacacaatgtcagcccctgaattacagacccaggcattccaatcacctcccacc
agcaaccataccttaagcatgagtgcagccccctttcaggccatgcatactatttttaaa
gtgaatgctccgttgccgccgagggacatgaaaccagagacctcttcatattcagagtcc
tacaaccagagctgttctacagctagcacccagacaaccctgcagtgctcctcgcagccg
gcctacacgctggatcaaaacacaatccctcatgaaactctgcagccaggcaagaccaac
gctttcttaatctgctggagtgtctgtggaggcgtcatgaatctgggtttttgtttcaat
atacacaagggcttcatcaatggggttttctggtgtttaactttcacatgctgtttcgct
tgtttcatttcccccccccccctttccacagtcacaacctatcagtctgaatgtccagtt
agcaatggatgtcaagtttacatgtctccaggacaacagaatgccttccctcgctcaaac
caggcctactacaataacagaggcacaataagaggaacgccccgtgggagcagaggcctg
gcaaactcttatcgctcacccagtggatataaagcagggtttgatggttacagaggtgga
atgcagtctccgggtggaaactacactcatcaactgtatcctgccagagaatatacaaca
atgctgtatggatcaagggaagctgggtttcagcagaactataaacgtggagggcctgct
ggacagaaaacaaattcaagagcagggtggagtgactcgtctcaggtgagtagtccagaa
cgagaccatgaaaccttcaacagtgtggactctggccatgggggctcccgctgcatcacg
cccatcgacattccggtcacgagccaggcgaccaccctcatgcctgtacacgtctacccg
ctccctccgcagatgcgcgtggccttctctgctgcccgcacttccaacttcgccccgggc
accctggaccagaccatcgcctttgacctgctcctcaataacctcggggagacctttgaa
atgcatatgggccggttctcctgcccagccaatggcacttatgttttcatcttccacatg
ctgaagctggcagttaatgtgccgctttatgtgaacctcatgaagaatgaggaggtcttg
gtgtctgcctatgccaatgatggtgcccccgaccatgagactgccagcaaccatgctgtg
cttcaactttaccaaggagaccagatctggctccgtctacacagaggtgccatctatgga
agcagctggaagtattccacattctctggctacctcttataccaggactga
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