Polyodon spathula (Mississippi paddlefish): 121319771
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Entry
121319771 CDS
T07273
Symbol
lamb4
Name
(RefSeq) laminin subunit beta-4
KO
K06245
laminin, beta 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121319771 (lamb4)
04518 Integrin signaling
121319771 (lamb4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121319771 (lamb4)
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Paralog
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
EGF_LMN_ATRN
LAMB4
LAMB1
Alanine_zipper
AAA_lid_2
JAG1-like_EGF2
F5_F8_type_C
FUSC
EzrA
Motif
Other DBs
NCBI-GeneID:
121319771
NCBI-ProteinID:
XP_041113518
LinkDB
All DBs
Position
8:31550655..31576144
Genome browser
AA seq
1815 aa
AA seq
DB search
MLKLFLQGFIALQSTAKSSDIFFFSNIREMQLLITLLAAVVYAQDECIRNSCHPQLGDLL
IGRSSQLSATSTCGLNGPQKYCILGYLENEQKCFTCDSSYPYNRYNNPSSHQIENIITTF
EPDRKLKWWQSENGVDRVSIQLDLEALFQFSHLVLTFKTFRPAEMLIERSRDNGRTWKVF
RYFSQDCKSSFPSIPTGPAQRIEDVICDSKYSGTEPSTDGEVVLKALDPNFQIENPYNPH
IQELITMTNLRVNFTRLLTLGDTLLLRRKRNPQEKYYYALYEMVVRGSCFCNGHASQCMP
VDNARGDVFREQRMIHGRCVCQHNTDGLNCERCKDFYNDVPWRPAEKSSINGCKKCNCNG
HSESCHFDMAVYLTSGGVSGGVCENCQHNRMGPRCEQCRPFFYEDSSACIPCDCDPEGSL
NNGMCESHTDPISRTVAGRCICKKNVEGVRCDRCKTGFFGISRDDPQGCQYCRCNRLGSV
LAPSPCDPVTGECVCQRFAFGPLCDQCVQGYWGLGNTVYSCSLCDCDIGGAYNDMCSLTD
GQCQCLPHITGRRCNDPAPGYFFAPLDYYIYEAEYAAPLGSAASLVKPTPLPKCEAYFRQ
RGYAFKFRNGKFVLTKIAKRSIREKKQAQQNTIPLDPGSQLQIIFRQRSPDRPVTWTGPG
FVRVQDGAGLRFTVNNIPAFLDYSIVIRYEPEASDDWTAEISVTPFSVPNDGRCPNQEPE
TKTVTLSALSRIAILDTPACLDREGRYFVDIIFRQPYGTGSHVLVDSIGLIPKIESLQNF
CSRTDLEEYRRYQCIEIASEVGSQLLPEVCERLIASMSARIHNGAVSCKCNAQGSVSASC
SKFGGQCQCKPNVIGRCCDTCAPRSFGFGSSGCTSCDCDPQGSVSEMCDQANGQCPCRRE
IYGRRCSQCQPGYFGFPQCRPCQCNGNSKICDPRTGACLNCRGFSTGNNCERCLDGYHGD
PTFREPCEPCLCPDTKASGRYFAHSCNKDHNALQEVCNCIEGYAGAHCDMCPAGYYGSLT
RAEERCQQCHCNNNIDPTDPGACDRLTGECLKCLYNTDGPNCEFCRPGYFGSALQQNCIA
CVCNPVGTDCNSCPSNKTCVCDQSSGQCPCLPNVVGTSCNECAPGYWDMGSGRGCQPCDC
VPGNSLSNQCNQFSGQCQCRPEFGGKQCNECGQNFFGNPRFGCISCNCTIEGTERPVCDQ
YTGTCNCRTGVIGKFCDQCARGFLPEFPACTRCHPCFELWDKNVSDIRQTLQKLIKASSI
TYDDKLPTYEKQFDELEKKLAEVQRLLNSPVASLEEVQKAEELCDQIRRLTDQIDPNSIV
VDDTPVLNSEINSIRNELNLHFNDLKNRVKLIFKFDVTKLLDVYNTIKKHYKDSNNTEQK
VKNTQPTIDQSRNTREKAIGLLDKASLPEDLDALQKKINELNVKDLNEKVCGAPGDEQCS
EATCGGALCRDTSGNRKCGGLYCKGSLPVAHNATEEAKKTEKKIPILLTQLEESEKEIGN
ARITAQETKEKASELSKKITKNKDKYEKEKEKTNALIKSVKDFLTGDSVLPEDIEKIAEA
VLALRIPSSPSPEDLIRKIQNILVDCKKIESVIDNLNNKTNEVKELLEQAEETEKRAKAL
DIMEAKKALEKAKEVQDKVKKSIDETKDHFDAINDNIYQTKEKLDRIEENNMDLMNRLND
LNREIKNLKEKTEMNRLQAKDAKEAAEGALANATEAEKDLKEVNDQFQKLKEKEKGNGAS
QEAIDKAKMLKTEAEELAKDVGGKMKEIMDLEKKIEDLLKSKEDKEKEISELEDRVRNVR
NEIIKRGIAYSTCQF
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagctatttttgcagggattcatagccttacaaagcactgccaagagcagcgat
atctttttcttcagcaatattcgagagatgcagctgctcattaccttactggctgctgtt
gtctatgctcaagatgaatgtatcaggaactcgtgtcatccacaacttggagatctgctg
ataggccgcagctctcagctttcagcaacttcaacctgtggtttgaatggacctcagaag
tactgcatcttgggatacctcgagaatgaacagaaatgcttcacttgtgactctagttac
ccttataatcgctataacaacccttctagtcatcaaatagagaacatcatcacaactttt
gagcctgatcgaaaattaaaatggtggcaatcggaaaatggtgttgatcgtgtcagtatt
caactagatttggaagcactttttcaattcagccatcttgttctgacatttaagaccttt
cgccctgctgaaatgctaattgaaagatccagagataatggtcggacgtggaaggtgttc
cgatatttttctcaggattgcaaatcatctttcccctctattccaactggcccagcacaa
aggattgaagatgtcatttgcgattccaaatactctggcacagagccgtccactgatgga
gaggttgttttaaaagcattggatcctaactttcaaatagagaatccttataatccacat
atacaagagctcataactatgacaaaccttcgagtaaacttcaccagactcctgacactg
ggagacactttactattaaggcggaagaggaatcctcaggagaagtattactatgctctc
tatgaaatggttgtccgcgggagctgcttctgtaatggccatgccagtcagtgtatgcca
gtggacaatgcaagaggagatgtatttagagaacaaagaatgatccatggaagatgtgtc
tgccagcacaacactgatggtttgaactgtgagagatgcaaagacttttacaatgatgtc
ccctggaggccagccgagaaatcaagcataaatggctgtaaaaaatgcaactgcaatgga
cattcagagagctgccattttgacatggcagtgtatttaactagtggtggagtcagtgga
ggtgtttgtgagaattgccaacacaatagaatgggaccaagatgtgagcagtgcagaccg
ttcttttatgaagattcttctgcatgtatcccctgtgactgtgacccagaaggttctttg
aataatggaatgtgtgagtctcacacggatcccatatccagaacagtggctggccgctgc
atatgtaagaagaatgtagaaggagtcagatgtgatcgctgcaagactggtttttttggg
ataagccgagacgatccacagggttgccaatactgcagatgtaacaggctgggaagtgtt
ctagctccatcaccctgtgacccagttactggagaatgtgtttgccagaggtttgctttt
ggacccttatgtgatcaatgtgtgcaaggatactggggccttggaaatacagtatatagc
tgttctctctgtgactgtgatattggcggagcgtataatgatatgtgctctttgactgat
ggacagtgtcagtgtctccctcacattactggtcgtagatgcaatgacccagcgcccggc
tacttctttgctccattagactactacatttatgaagctgagtatgctgctcctttagga
agtgctgcctctttggtcaagccaacaccccttcctaagtgtgaagcatatttccgacag
cgaggatatgcgtttaaatttcgtaatggtaaatttgtcttaaccaaaatagctaaacgc
agcatccgggagaagaagcaagcacagcagaacacaatcccccttgatccagggtcccag
ttacagattattttcagacagcgctcccctgacaggcctgtcacatggactggccctgga
tttgtgagggtccaggatggagcggggctgagattcaccgttaataacatccctgcattc
ctggactattctattgtcatccgctatgaacctgaggcttcagatgactggacagcagag
atcagtgtcacccccttcagtgtacctaatgatggacgttgcccaaatcaggaacctgag
actaaaacagtcaccctatcagctttgtcaaggattgcaattttggatactcctgcgtgc
ctggatcgtgaagggaggtactttgtggacattattttcaggcagccttatggtacaggc
tcccacgtccttgttgattcaattggtcttattccaaagattgagtcccttcagaatttc
tgttcaagaactgatttagaggagtaccgacgttatcagtgcattgagattgcctctgaa
gttggatcccagctgctaccagaggtgtgcgaaagacttattgcaagcatgtcagcacga
atacacaacggggcagtttcctgcaagtgcaatgctcaaggctctgttagcgcttcttgc
agtaagtttggaggtcagtgtcagtgcaagcccaatgtgattgggcgctgctgtgataca
tgtgctcccaggtcctttgggtttggatccagtggctgtacatcttgtgactgtgaccct
cagggctctgtcagtgaaatgtgtgaccaggcgaatggacagtgtccctgtcgaagagag
atttatggacggcggtgtagccagtgccagccaggttactttggtttccctcaatgccgc
ccatgccagtgcaatggcaattcaaagatctgtgatcctagaactggtgcatgtctcaat
tgcagagggttttcaacgggaaacaactgtgaaagatgtctggatggttaccatggagac
cccacttttagagaaccttgtgaaccctgcctttgccctgatactaaggccagtggtcgt
tactttgctcattcttgtaacaaggatcataatgccctacaagaagtctgtaactgtatt
gaaggctatgcaggtgctcactgtgacatgtgccctgctgggtactacggcagtttgact
cgtgctgaggagcggtgccagcagtgccattgtaacaacaacatagacccaacagatccg
ggtgcctgtgacaggttaacaggggaatgcttgaaatgtctctacaacactgacggaccc
aactgtgaattctgcagaccaggctattttggatcagctctccaacagaactgtatagca
tgtgtttgcaatccagtgggcactgactgcaacagttgcccaagtaacaaaacatgtgtt
tgtgaccagtcatctggccagtgtccctgtttaccaaatgtggttggtacaagttgtaat
gagtgtgcacctgggtactgggacatgggcagtggaagaggatgccaaccatgtgattgt
gtgcctgggaactctctaagcaaccagtgcaatcagttttctggacagtgtcaatgcaga
ccagaatttggaggaaagcaatgcaatgaatgtggtcaaaacttttttggaaaccccaga
tttgggtgtatttcctgtaattgtacaattgaaggaacagaaagacccgtgtgtgatcaa
tacactgggacctgcaactgccggactggtgtcatagggaagttctgtgatcagtgtgct
cgagggtttcttccagagttcccagcatgcactcgctgccacccctgctttgagctctgg
gacaagaacgtcagtgacattcgtcaaactcttcagaaactgattaaagcatcatcaatt
acgtatgatgataagctccccacttatgaaaaacagtttgatgagctggagaagaaattg
gctgaagttcagaggcttctgaacagcccagtggcatctctagaggaagttcaaaaggca
gaagaattatgtgaccaaatcagacgactaactgatcagattgatccaaactcgattgtt
gtggatgatacacctgtgttaaacagcgagattaatagtattagaaatgaacttaatctg
catttcaatgatttgaaaaacagagtaaagttgatttttaaatttgacgttacaaaatta
ctggatgtctacaacaccattaaaaaacactataaggattccaacaatactgaacagaaa
gtaaaaaatacccagcctaccatcgatcaatcgagaaacaccagggaaaaggcaattggt
ctacttgataaagcaagtttaccagaagatttggatgccttgcagaaaaaaattaatgag
ctaaatgttaaagatctaaatgaaaaagtgtgtggggctccaggagatgagcaatgctct
gaggcaacatgtggaggtgctttgtgcagagacacttctggcaatagaaaatgtgggggg
ctttactgcaaaggaagtttaccagttgctcacaatgctactgaggaagctaagaaaaca
gaaaaaaaaatccccatccttctaactcagctcgaagagtctgagaaagagataggaaat
gcaagaataactgcacaggagaccaaggaaaaggcatcagagttaagcaagaagataaca
aagaataaagacaaatatgaaaaagaaaaggaaaaaacaaatgctctcatcaagagcgta
aaggactttttaacaggtgacagtgtgctaccagaggatattgagaaaattgctgaagct
gtcctagccctcaggattccaagctcacctagcccagaagacttgatccggaaaatccag
aatattctggtagattgcaagaaaatcgaaagtgtaatagataacctcaataataagacc
aatgaggtaaaggaactgttggaacaagcagaggaaactgagaaaagagcgaaggccctg
gatatcatggaagctaagaaagctttagaaaaagcaaaagaagttcaagacaaagtgaaa
aaatccatcgatgagacaaaagatcattttgatgcaatcaacgacaatatttatcaaact
aaagaaaagttagatagaattgaagaaaacaatatggacttaatgaacagacttaatgac
ctgaacagggaaattaaaaatctcaaggagaaaactgaaatgaatagattgcaggcaaaa
gatgcaaaggaagcagcagaaggagcccttgccaacgctacagaagctgagaaggacctc
aaggaggtgaatgatcaattccagaaattaaaagaaaaggaaaagggaaatggagcatcg
caagaagctatagacaaagcaaaaatgttaaagacagaagctgaagaactagcaaaagat
gtaggaggaaaaatgaaagagataatggacctggaaaaaaaaattgaagatctactgaag
agtaaagaagacaaagaaaaagaaattagtgaactagaggatcgcgtcagaaatgtcaga
aatgaaatcattaagagggggattgcatacagcacctgccagttttag
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