Polyodon spathula (Mississippi paddlefish): 121319773
Help
Entry
121319773 CDS
T07273
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121319773
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121319773
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
ATG17_like
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
121319773
NCBI-ProteinID:
XP_041113519
LinkDB
All DBs
Position
8:31578865..31607544
Genome browser
AA seq
1782 aa
AA seq
DB search
MWIVQIATILVVWVHALAQGPQLSYGCAEGSCYPATGDLLIGRADQLSSTSTCGLLKPEP
FCIVSHLQEEKKCFVCDSKERYDENVNHTTSHGIENVVTTFAHNRLKTWWQSENGLENVT
IQLDLEAEFHFTHLIMTFKTFRPAAMLIERSSDFGRAWQVYRYYAYDCESSFPGISVGPM
KKVNDVICDSRYSDIEPSTEGEVIFRVLDPAFRIEDPYSPSIQNMLKITNLRINLTRLHT
LGDNLLDSRMEIKEKYYYAIYDMVVRGNCFCYGHASECAPVDGTGEDVEGMVHGHCMCRH
HTKGLNCEQCEDFYHDLPWRPAEGRNSNACKKCNCNEHSFTCHFDMAVYMSTGNVSGGVC
DSCEHNTMGHSCEQCKPFFYQHPERAIRDPNICEQCNCDPVGSHNGGICDRYTDFSTGLI
AGQCRCKPNVEGERCDQCKEGFYGLSADPLGCRPCTCSPLGTLPGGNPCSAETGNCYCKR
LVTGRDCDQCLPQHWGLSNDLDGCRSCDCDHGGALNNNCSAETGQCECREHMFGRQCTEV
ESGFYFIALDHYTYEAEDANFGPGVSVVQRPYPQDRTPTWTGMGFVNVPEGAYLEFYIDN
IPTSMEYDILIRYEPQLPDKWEEAVITVVRPDIISTSSRCVNTVPDDDNQVVSLPPGSRY
VVLPRPVCFEQGLNYTVRLHLPLYSPLNDVQSPYTLIDSIVLMPHCKTLEIFTSGSGEDV
ATNSAWETFQRYRCLENSQSVVETPMTDVCRNIIFSISALLHQGALSCQCDPQGSLSTVC
NPSGGQCQCRPNVVGRNCDKCAPATYLFGPSGCRSCECNPQGSSNSFCHGETGQCQCIPG
AYGRQCEKCLPGYWGFPSCRPCNCNGHTDHCDPQTGECVGCKDQTTGRTCDRCLTGYYGN
PILGSGDHCRPCLCPDGPNSGRQFASSCSQSQDSLKVSCACNEGYAGARCDDCAPGYYGN
PEEIGGVCQLCQCNNNIDMLDSGSCDAHTGICLKCLYNTEGGSCERCKLGYYGDALTQTC
RKCVCNYLGTVNDTCPSSSECHCDLNNGQCQCLPNVIGQNCDQCATDTWNLASGSGCEDC
DCDETRSFGSSCNELTGQCACKPGFGGRACNNCQEFFWGDPAEECKACDCEPSGIQTPQC
DRVDGNCICEEGIAGPRCDKCARGYSGVFPDCVQCHQCFAEWEVLIGDLTSKTHKLVKKV
NSIKASGITGPYQDAVNTIEQRANDIRSLLAQNPAAQPLSDIQNLLEEAEKLIREVNKNV
QNIELELVATSANNSNANTELNDLQKESQNLNKVVNDLAEQLEFVKNSDVQGALDSVNKY
FQQSMDAESRVNASTTDPDNTVEQSSAIRQQVEDLMNETLIQFEENQENYTKHLDDLAAQ
LQTLDLSEVNEKTCGSSSGASCTEEQCGGLSCRDEDGTTKCGGEGCDGLVTLSHNAWKKA
VDFDREILNALAEVDQLSKMVSEAKLKADEAKLNAQEVLQKTNSTKQKVDKSNEDLRNLI
KQIREFLTQDGADLESIEAVANEVLKMQMPTTPQQLQELTDDIRERVQSLSDVEIILNQS
AEDIHRAENLLGEARKASKEATDVKNTADMIKEALEEAEKAQNAAEKAIKQADVDIRGTQ
DLLTSIDSETAASESRLNNATQRLAQLEKDIGDLKQKASDNTDMAEEIEKSADKVKHDAE
EAKRELDDELKNKYDVVEVLIVQKSEGVTDARKRAEALQNEAKQLLSHAGSRLQELKDLE
KTYEDNQKTLEDKAKLLVELEEAVRSLLQIISQKVAVYSTCL
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atgtggatagtgcaaatcgctacgattctagttgtctgggtgcacgcccttgcacaggga
ccccagttaagttacggctgtgctgagggaagttgttacccggccacaggtgacttgttg
atcggaagagcggaccagctttcttccacctccacctgtggattgttaaaacctgaaccc
ttttgcattgttagccatctgcaggaagagaagaaatgctttgtttgtgattccaaggaa
cggtatgatgagaatgtaaaccacacaaccagccatggcattgagaacgttgtaacaaca
tttgcacataaccgcttaaaaacctggtggcagtctgaaaatggtttggaaaatgttacc
atccagctggatctggaggcggaattccatttcactcatctcattatgacattcaagaca
tttcgtccagctgccatgttgattgagcgctcttctgattttgggagggcctggcaggtt
taccgttattatgcatatgactgcgaatcatcattccccggtatttctgtggggccaatg
aagaaagtcaatgacgtcatctgtgactcccgctattcggacatcgaaccttctacagaa
ggagaggttatctttcgagtcttggatcctgcttttagaattgaagacccttacagcccc
agtatccagaatatgttaaaaatcacaaacctgcggatcaatcttacaagactacacacc
ttgggagataacttgctggactcaaggatggaaatcaaggaaaaatactattatgccatt
tatgacatggtagtccgtggtaattgtttctgttatgggcatgcaagtgaatgcgctcct
gtagatggaactggagaagatgtcgaaggaatggtacacgggcattgcatgtgcagacac
cacaccaaaggtttgaactgtgagcagtgtgaggatttctaccatgatctaccctggagg
ccagctgagggacgcaacagcaatgcttgtaaaaaatgtaattgcaatgaacactcattc
acctgtcactttgatatggctgtgtacatgtccacgggaaacgtcagtggaggggtatgt
gacagttgtgagcacaacactatgggacatagctgtgaacagtgcaagcctttcttttac
caacatccagagagagctatccgtgaccccaacatctgtgaacaatgtaactgtgaccca
gttggttcccacaatggtggaatctgcgatcgctacactgacttttctaccggtctcatt
gctggacaatgtcgctgtaaaccaaacgttgagggcgagcgttgtgatcagtgtaaagaa
gggttctatgggttaagtgctgatcccttggggtgtcggccttgtacatgcagtcccttg
ggaacgcttcctggaggaaatccatgcagtgcagagacgggaaactgttactgcaaacgc
ttggtaacagggagggactgcgatcagtgtctgccacaacactggggactgagcaacgat
ctggatggatgcaggtcttgtgactgtgaccatggtggagcgctcaacaacaactgttct
gcagaaaccggacagtgtgagtgtagggaacatatgttcggacgccagtgcaccgaagtt
gaatctgggttttactttattgcactcgatcattatacgtacgaggcagaggatgccaac
tttggcccaggagtgagcgtagtccaaaggccatatcctcaagatcggacaccaacttgg
acaggaatggggtttgtgaatgttccagaaggggcctatctagaattctatattgacaac
atccccacttcaatggagtatgatattctaatacgctatgaacctcagttaccagataaa
tgggaagaggctgtaataaccgtcgttcgcccagacatcatttctaccagcagcagatgt
gtgaatacagtgcctgatgatgataaccaggtggtatctctgcctccaggatccagatat
gtcgtcctgccacgccctgtgtgttttgagcagggactgaattatactgtccgcctgcat
ctgccactttactcccctctgaatgatgtccaatctccatacacgttgattgattctatt
gtactcatgcctcattgcaaaacgttagaaatatttaccagtggttcaggggaggatgtt
gctacaaacagtgcctgggaaaccttccagagataccgctgcctggaaaacagtcaaagc
gtggtggaaacgccaatgactgacgtctgcagaaacatcatctttagtatttctgcactg
cttcatcaaggagcgttgtcctgtcagtgtgatcctcaagggtctcttagtacagtatgc
aaccccagtggagggcagtgccagtgcaggcctaatgtggttgggagaaattgtgacaaa
tgtgctcctgcgacctacttgtttggacccagtggctgcagatcctgtgaatgtaacccc
caaggctcttctaattcattctgccatggtgagactggacagtgccagtgtatccctgga
gcctatggacgtcagtgtgagaaatgtctgccaggatactggggatttcccagctgtcgt
ccctgcaattgcaatggacataccgaccactgcgacccccagactggggagtgtgtgggc
tgtaaggatcaaaccacaggccgcacctgtgataggtgtttaacaggttactatggcaat
ccaattctcgggtcaggtgatcactgccggccttgtctttgtccagatggccccaatagt
ggacgccagtttgctagcagttgttcccagagccaagattctctcaaagtttcttgtgca
tgcaacgaggggtatgcaggtgccaggtgtgacgactgtgctccaggttactatggtaac
ccagaggaaataggaggagtgtgtcagttgtgccaatgtaacaacaatattgacatgttg
gattcgggttcctgtgacgcacatactggaatttgtctgaaatgcctctacaacactgag
ggtggaagctgtgagcgatgcaagcttggctactacggagatgctctgacacaaacctgc
agaaagtgtgtttgtaactacctgggtacagtgaatgatacctgcccctcttcaagtgag
tgccactgtgacctcaacaatggtcagtgccagtgtctcccgaacgtgattggacagaat
tgtgatcagtgtgctacagacacttggaatctggccagtgggagtgggtgtgaggattgt
gactgtgatgaaacacgctcctttggatcatcttgtaatgagttaacaggtcagtgtgca
tgcaagcctggatttggaggtcgtgcttgcaacaactgccaggagtttttttggggagat
cctgctgaggaatgcaaagcttgtgactgtgaacccagtggcatccagacaccccagtgt
gaccgcgtcgatgggaactgtatctgcgaagaaggaatcgcaggtccacgttgtgataaa
tgtgctagaggctactctggtgttttccccgactgcgtacagtgtcaccagtgctttgct
gagtgggaagttctcattggagacctaaccagtaagacccacaagcttgtgaagaaggtg
aactctatcaaagcaagtggcattactggaccctaccaagacgcagtaaacacaatcgag
caaagggccaatgatatcagaagtcttctagctcagaatcctgccgcccagcccctcagt
gacattcagaatctcctggaagaggcagagaaactaatcagggaagttaacaaaaatgta
caaaatatagaactggaacttgttgctacatcagccaataacagcaatgcaaacactgag
ctaaacgaccttcagaaagaatctcagaatttgaacaaagtggttaatgacttggcagag
cagctggagtttgtcaagaattctgatgtccagggagctttagacagtgtcaacaagtat
tttcagcaatctatggatgctgaatcacgggtaaatgcttccactactgacccagataac
acagtagaacagtcctctgccattcgccagcaagtggaagatttaatgaatgagactctg
attcagtttgaggaaaaccaagagaattatactaaacatttagatgatcttgctgctcag
ctacaaaccctagacctgtctgaagtcaatgaaaagacttgtggaagttcttctggagcc
tcttgtactgaagaacagtgtgggggtttaagctgtcgtgatgaagatggaaccacaaaa
tgtggaggcgagggttgtgatggccttgttactttgtctcacaatgcttggaagaaagct
gtggactttgacagagaaattctcaatgccctggcagaggtggaccaactgtctaaaatg
gtttccgaggcaaaactgaaggctgatgaggccaagctaaatgcacaggaagttctccag
aaaacaaactcaaccaaacagaaagtggataaaagcaatgaagacctgagaaatttaatc
aagcaaatccgcgagttcttgacacaggatggcgcggatctcgaaagcattgaggctgtt
gctaatgaggtgttgaaaatgcagatgcctactaccccgcaacagcttcaggaattaact
gatgacattcgggagcgagtgcaaagtttgtctgatgtggagataatcttgaaccagagt
gctgaagatattcaccgagctgagaatctgcttggtgaagccagaaaggcaagtaaagaa
gcaacagatgtcaagaatacagctgacatgataaaggaagccctggaggaagctgaaaaa
gcccagaatgctgcagagaaagcaattaagcaggctgatgttgacatcagagggactcag
gacctgttgacctcgattgactctgagactgcagcttcagagagcagactaaacaatgca
acccaaagacttgcccagctggagaaggatattggcgatctaaaacagaaggcatctgac
aacacagatatggctgaagagattgagaaatcagcagataaagttaagcacgatgcagag
gaagctaaaagggaattagatgatgaactgaagaacaagtatgatgttgtggaagttcta
atagtccaaaagtcagaaggtgtgactgatgcaaggaagagggcagaggcacttcagaat
gaagcaaaacaactgctatcacatgctggcagcagacttcaggaactaaaagatttagag
aaaacatatgaagacaaccagaaaaccttagaagataaagcaaagcttttagttgagcta
gaggaggcagtacgctcacttctgcagattatcagccagaaagttgctgtttatagcacc
tgcttgtaa
DBGET
integrated database retrieval system
