Polyodon spathula (Mississippi paddlefish): 121319849
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Entry
121319849 CDS
T07273
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121319849
03015 mRNA surveillance pathway
121319849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121319849
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121319849
mRNA cycle factors
P-body specific factors
121319849
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF1722
Motif
Other DBs
NCBI-GeneID:
121319849
NCBI-ProteinID:
XP_041113646
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All DBs
Position
8:34372027..34410747
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AA seq
1282 aa
AA seq
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MPAERKKSVNMDEKEASSISSKDKESGDRRPASTREKGKDDSKLCSKKDNLKAAEEKKRR
LEEEKRKKEEKERKKKEEEKLKAEEDQKKKEEEEKRKQEEEEKRLQEEEERRQREDEAAQ
IKEKEEAHQLHQEAWERHQSRKELRNKNQNAQDGRPEETFFSRLDSSLKKNTAFVKKLKT
ITEQQRDSLSNDFNSLNLSKYIAEAVGSIVEAKLKISDVNCAVHLCSLFHQRYAEFAPLL
LQSWKKHFEARKEEKTPNVSKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINTDRE
THMHVSVVISFCKHCGDDIAGLVPRKVKLAAEKFGLSFPLSEIINSEKQQPFQNLLREYF
TSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLSDLL
DENMPELPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFVPA
ILFKDNEKSSQNKDNKEEAKEVKDGKDNKDVPSTEELELELETLDINDDTLEMEAVDEAE
ADDLTKKLLDEQEQEDEETSTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKS
NRRKLVRALFTVPRQRLDLIPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQIN
IETKNKTVRFIGELTKFKMFSKSDTLHCLKMLLSDFSHHHIEMACTLLETSGRFLFRTPE
SHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPVEKTVRRKRPPLQEYIRKLL
YKDLSKVTTEKVLRQMRKLPWQEPEAKNYLICCMVNIWNLKYNSIHCVANLLAGLVAYQE
DVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFISF
GVSPDGTASPLDPPEHLFRIRLVCTVLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSL
DVWTEGHPFPIDIDYMLSDTLELLRPKMKLCCSLEEAVRQVTVLEREFLVKLGLANDKDS
KDSSSIREGEAMEEEDEDDEEECGAETEEQSGNESEMNEPEEEEGSENEEEEGEREEEEE
ENTDYLTDSNKENETDEENNEVTIKGGGLKHVACAEDEDFIQALDKMMLENLQQRSGESV
KVHQLDVAIPLQLKSQLKKGPPPTGGGEGDTEIVDTMQFVMLTRKGNKQQFKILNVPLSS
HLAANHFSQQQVEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRY
QHPKGAPNADLIFKTGGRYTYK
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcagaacgcaaaaagtcagtaaacatggatgagaaagaggcaagttctatcagc
agcaaagacaaagagagtggagataggcgacctgcttccaccagggagaagggaaaggat
gattctaaactttgcagcaagaaggacaatctgaaggctgcagaggaaaagaagaggaga
ctggaggaagagaagcgtaagaaggaagaaaaggagcggaagaaaaaagaagaggagaag
ctgaaagctgaagaggaccagaaaaagaaagaggaggaagagaaaagaaagcaggaggag
gaggagaagaggctgcaggaagaagaagaaagaagacagcgtgaagatgaagcagcgcaa
ataaaagaaaaggaagaagcacatcagttacatcaggaggcgtgggagcgccaccaatcc
aggaaagagcttcgcaacaagaaccagaatgcccaggatggccgtcctgaggagaccttc
ttcagcaggcttgattctagcctcaagaagaacactgcctttgtcaagaagctgaaaact
atcacagagcagcagagagactctctctccaatgatttcaatagcctcaacctcagcaag
tacattgcggaggctgttggctccattgtggaagcaaagttaaaaatatctgatgttaac
tgtgctgttcatctgtgttccctcttccaccagcgctatgctgaatttgcccctttgctt
ctccaatcctggaaaaagcactttgaagcaagaaaagaggagaaaactcccaatgtaagc
aagctgagaactgatctcagattcatcgctgagttgacgattgtcgggatttttactgat
aaagagggtctgtccctcatctatgagcagctgaaaaacatcatcaacacagaccgtgag
acgcacatgcatgtttcagtggtgatcagtttttgcaagcattgtggggatgacattgct
ggcctggtgcccaggaaggtgaaactggctgctgagaaatttggcttgagtttccctttg
agtgagatcatcaattctgagaagcagcagcccttccagaacctgctaagggagtacttc
acttccctgaccaaacacctgaagaaagaccacagagagttgcagaacatagagagacaa
aacaggcgtattctacattccaagggggagctgagtgaagacagacacaagcaatatgaa
gagtttgccacatcgtatcagaagctgcttgctaacactcagtctttgtcagatcttctg
gatgaaaacatgcctgaacttccacaagataaaactgtacaagaagagcatggtcctggc
attgacatctttactcctggcaagcctggagagtatgacctggaaggaggaatctgggag
gacgaggacgcacgcaacttctatgaaaatatggttgatctgaaagcctttgtacctgca
atattgtttaaagataatgagaagagttctcagaacaaagacaacaaggaagaagcaaaa
gaagttaaagatgggaaggataacaaagatgtgccaagtacagaagagctggagctggag
ctggagacgctggatattaatgacgatactctggagatggaagcagtagatgaggcagag
gcagatgaccttacaaagaaattacttgatgaacaagaacaagaagatgaagagacaagc
acaggctcccatctgaagttgatagtggatgcctttcttcaacaattacccaactgtgtc
aacagagacttgatagacaaggctgcaatggatttctgtatgaatatgaacaccaaatct
aacagaagaaagcttgtccgagcccttttcacagttccaaggcagcggctggatttgatt
ccgttttatgctcgccttgttgctacattgcatccttgcatgtctgatgttgcagaggac
ctatgctctatgctaaaaggagacttcagatttcatgtacggaagaaggaccagatcaat
attgaaacaaaaaacaagactgtaagatttataggagagctgacaaagttcaagatgttt
tctaaatcggacactcttcattgtttaaagatgttactatctgacttctctcatcaccac
attgaaatggcctgtacacttctggagacatctggacgatttctcttcaggacaccagaa
tcccacttgaggaccagtgtccttttggaacaaatgatgcggaagaaacaagccatgcac
ttagatgcacgctatgtcaccatggtagagaatgcatattattattgtaacccaccgcca
gttgaaaaaactgtgaggagaaagcgaccaccacttcaagagtatattcgcaaactcctt
tacaaggacctgtccaaagtcaccacagaaaaggtgctacgacagatgagaaaattgccc
tggcaggaaccagaggcaaaaaattatttaatctgttgtatggttaacatctggaattta
aagtacaacagcatccactgtgtagcaaacctgctagcagggctggtggcatatcaggag
gatgtgggcatccatgtggtggatggggtgcttgaggacatcagactgggaatggaggtt
aatcagcccaagttcaatcaaagacgaatcagcagtgccaaatttttgggggaattgtac
aactatagaatggtagaatcagcagtgatcttccggactttgtattcctttatttcattt
ggtgtaagtcctgatggaactgccagtccactagatcctccagagcatctgttccgaatc
cgtttggtttgtactgttctggatacatgtggacaatactttgacaggggatcaagcaaa
agaaaacttgactgctttcttatctacttccagcgttatatctggtggaagaagagtttg
gatgtttggaccgaaggccacccattccctattgatattgattacatgctcagtgatacc
ttagagctgctgcgaccaaagatgaaactgtgttgctctctggaagaggctgttcggcag
gtgactgtcttggagcgtgagttcctggttaaactagggctagctaatgacaaagactca
aaagattcgagcagtattagagaaggagaagccatggaagaggaagatgaggatgatgag
gaggagtgtggtgcagagactgaggagcagtctggaaacgagagtgaaatgaatgagcct
gaagaagaggagggttcagagaatgaggaggaagagggagagagagaggaggaagaggag
gagaacactgactacctgactgattcaaataaagaaaacgaaactgatgaagaaaacaat
gaggtaacgataaagggtggaggtctcaaacatgttgcatgtgcagaggatgaagacttc
atccaggccttagataagatgatgctggaaaaccttcagcaacgcagtggcgagtcagta
aaagtgcaccagctggatgtagccattcctctgcagctgaagagccagctaaagaaagga
cccccacctacaggaggtggggagggagacaccgagattgtagacaccatgcagtttgtg
atgttaacgaggaagggcaacaagcagcagtttaagatcctaaatgtccccctgtcatcc
catcttgctgccaaccacttcagtcagcagcaagtggagcaggaggagaggatgcgcatg
aagaaactcaccctggacattaatgaacggcaagagcaggaggattatcaggagatgttg
caatccctagcacagcgcccagcccctgctaacacaaaccgggaaaggcggccccgttac
caacatcccaaaggagcgccgaacgccgatctcatcttcaagactggagggaggtacaca
tacaagtga
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