Polyodon spathula (Mississippi paddlefish): 121319888
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Entry
121319888 CDS
T07273
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator-like
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa02010
ABC transporters
pspa04145
Phagocytosis
pspa04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121319888
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
121319888
09144 Cellular community - eukaryotes
04530 Tight junction
121319888
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pspa02000
]
121319888
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
121319888
Transporters [BR:
pspa02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
121319888
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_membrane
CFTR_R
ABC_tran
SMC_N
AAA_29
AAA_21
DUF87
nSTAND3
FtsK_SpoIIIE
T2SSE
MeaB
AAA_16
MMR_HSR1
nSTAND1
RsgA_GTPase
Zeta_toxin
NTPase_1
Motif
Other DBs
NCBI-GeneID:
121319888
NCBI-ProteinID:
XP_041113750
LinkDB
All DBs
Position
8:36788535..36823719
Genome browser
AA seq
1469 aa
AA seq
DB search
MQRSPLENANFFSKLLFCWPSAILRKGYRQRLEISDIYKVSSCDSADTLSEKLEREWDRE
LATSKKNPSLFKAVRRCFFWQFVFYGILLYLGEASKSVQPQLLGRIIASYDPAHEEERQM
GFYLAFGLSLLFIARIFLLHPAIFGLHRLGMQIRIALFSLIYKKTLKVSSKVLDTISTGQ
LISLMSNNLNKFDEGLALAHFVWIAPLQCILLMGFIWELIGASAFSALAALTLLAIIQAC
LAQRMEHYRTKRAGKINERLVITSEVIENLHSVKAYGWEEAMEKIIDAIRQAEVKLTRKT
AYLRYFNSAAFFFSAFLAVIVSVVPFALSHGIILRRIFTTLSYCMILRMTITRQFPGSVQ
MWYDSLRVIQRIEDFLKKNEYKALDYNLSATEVEMVNVTASWDEAIGGLFEKVKQQSDIP
NGEDSLFFSNYSLYITPVLRNISLHLEKGKMLAVAGSTGSGKSSLLMMIMGELEPSEGFT
KHSGRISFSPQMSWIIPGTIKENIIFGLSYDEYRYTSVVKACQLEEDLAVLPEKDGTVLG
DGGVTLSGGQRARISLARAVYKDADLYLLDSPFSHLDILTEKDIFERCICTLVANKTRIL
VTSKLEHLKKADKILLLHNGQCYFYGTFTELQSQKPDFSSLLMGLQAYDNFSAERRTSIL
TETLRRCSVDSEAGFRADPVRQSFKQPGAELNEKRKSSLIINPLTAGRKFSSVGEDTLSE
TVERKLSFVPDSEPGEGGIPRSNLLNTDPTIRGQRRQSVLAFMTGAQKQGHQARRNSIFQ
QRMSIAPQSSLATELDIYARRLSKDNSFDVSEDIDEEDLKECFTEDHEGCNERTAWSTYL
RYVTSNRNLVLVLIFILVVFIIEVREQTLLIFVLTDDVWIRQNKTVGNASAPVHQAVIVT
RTSAYYIIYIYVATAESLLALGFFRGLPLVHTLITVSKSLHKKMLESVLRAQMSVLNTMK
TGRIINRFTKDIAVIDDMLPLVIFDVVQLVLIVMGAMLVVSVMEPYVFLAAIPVIVAFVM
LRAYFLHTSQQLKQLESEARSPIFSHLITSLKGLWSIRAFGRQAYFETLFHKALNVHTAN
WFLYLSTLRWFQMRIDMIFVIFFIVAAFVSVGTNGIGEGKVGIIMTLAMNIMSTLQWAVN
SSIAMDSLMRSVSRILKFIDLPQEALKICDKQKSSKPESLVIENPHTGQEWPSAGQMTVS
NLTAKYTEGGRNILENLSFSVNAGHRLGVLGRTGSGKSTLLSALLRLVSANGDITIDGVS
WNSVPLQEWRKAFGVLPQKVFIFSGTFRKNLDPHGKWSDEELWRVTEEVGLKSVIEQFPD
KLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPITFQIIRKTLKHAFA
NCTVMLSEHRLEAMLECQSFLVIEGSSVKPYDTIQKLLNESSLLKQAISSAERVNFFRLH
RRNSSKRKPRPKITALQEEAEEDIQDTRL
NT seq
4410 nt
NT seq
+upstream
nt +downstream
nt
atgcagagatcacctctagaaaatgccaacttcttctccaaacttttattctgctggcca
tcagcaattttaagaaagggatacaggcagagattagaaatatcagatatatacaaggtg
tcgtcttgtgattctgcagacacgctgtcagagaaattagaaagagaatgggacagagag
cttgcaacatcaaagaaaaaccccagtctcttcaaagcagtccggcgatgctttttctgg
cagtttgtcttttatggaatcctcctataccttggggaagcatcaaaatctgtacagccc
cagctcctgggaagaataatagcttcttacgatccagctcatgaagaggaacggcagatg
ggattctacctggccttcggcctctccttacttttcattgcaaggatattcctactgcat
cctgccatcttcggtcttcatcgtctgggaatgcagatcagaatagctttgttcagctta
atttacaaaaagactctaaaggtgtccagtaaagtcctagatacaattagcaccggtcag
ctaattagcctgatgtctaacaatctcaacaagtttgatgagggtcttgcattggcacac
tttgtctggattgcaccactgcagtgtattctgctgatgggatttatctgggagctgatc
ggggcctctgcattttctgcactggcagctctgactcttcttgccattatccaagcctgt
cttgcacaaaggatggagcactacagaactaagagggcaggaaaaatcaatgaaaggctg
gtaattacatcagaagttattgaaaacctccattcagtaaaagcttatggctgggaggag
gctatggaaaaaatcatcgatgccatcagacaggctgaggtgaagctcaccagaaagact
gcttacctcagatacttcaacagtgcagcctttttcttctctgccttcctcgccgtcatt
gtgtctgtggtgccctttgctctcagtcatggaataatccttcgcagaatattcaccacc
ttgtcctactgcatgatcctccgaatgactatcaccaggcagtttcctgggtctgtgcaa
atgtggtacgattccctgagagttatccagaggattgaggacttccttaaaaaaaatgaa
tataaagcactggattacaatctttcagcaacagaagttgaaatggtgaatgtaacagca
tcttgggatgaggctataggagggctgtttgaaaaagtaaagcaacaaagtgacattcct
aatggagaggacagcctgttcttcagcaattactccctgtatataacacctgtcctgaga
aacatcagcttgcatttggaaaagggaaagatgttggcagtagctggatcaacgggctca
ggcaagagctctcttctgatgatgatcatgggagaactagagccgtcggagggatttact
aagcacagcggccgcatctccttctccccccagatgtcatggatcatacctggaaccatt
aaagagaacattatatttggtctctcttatgatgaatacagatataccagtgttgtcaag
gcttgtcaacttgaagaggaccttgcagtgctcccagagaaagatggcacggtgcttgga
gacggcggggtaacattaagtggtggacagcgtgccaggatctccttggccagagctgtg
tataaagacgctgatctgtatctgttggattcaccttttagccatctggacatcctgacc
gagaaggacatatttgaaagatgcatttgcactcttgtggccaacaaaacccgtattctg
gtcacatcaaagctggagcacctaaaaaaggctgacaagatcctgctgctgcacaatggc
cagtgctatttctatggtaccttcactgagctacaaagccagaagcctgacttcagctca
ctgctcatgggcttgcaggcctacgacaatttcagtgcagaaagaagaacctccatcctg
acagaaacccttcgccgttgctcagtcgacagcgaagcaggcttccgcgctgatcctgtg
aggcagtcatttaaacaaccaggggcagaattaaatgagaagaggaagtcatctctcatt
attaatcctcttactgctggcaggaagttctcaagtgtaggagaggacactttgagtgag
actgtggaaagaaagctgtctttcgtcccagactctgagccaggagaaggggggatacca
aggagtaacttattaaacacagatccaaccattcgtggccagaggcgacagtcagtgctg
gcctttatgacaggcgctcagaaacaagggcatcaggctcggcgaaactctatatttcag
caaagaatgtccattgctccccagagctcgcttgctacagagttggacatttatgcaaga
cgcttatctaaagacaacagttttgatgtgagtgaagacatcgatgaagaagacttaaag
gaatgttttactgaagatcatgaaggctgcaatgaaaggaccgcatggagcacttacctt
agatacgtcacatctaatagaaaccttgttttggttcttatctttatcctagttgtattt
ataattgaggtaagggagcagactctcttgatttttgttcttacggatgatgtatggatc
aggcaaaacaaaactgttggaaatgcatctgctccagtacatcaagcagtgatcgttacc
agaaccagcgcttactatatcatttacatttatgtggcaactgctgaaagcctgctggct
ctcggattctttagagggcttcctttggttcacactctgataaccgtctcgaagagtctg
cacaagaagatgcttgaatcagttttacgagctcaaatgtctgtcttaaatacaatgaag
acaggtcgaattataaaccggttcacaaaagatattgctgtcatcgatgatatgctgcca
cttgttatattcgacgttgtgcagttggtgctgattgtaatgggagccatgcttgtggtc
tcggtaatggagccctacgtcttcctggctgccatccctgttattgtagcttttgtcatg
ttgcgggcctattttctccatacgtcacagcagctgaaacaacttgaatctgaagctcgt
agtccaattttttcccatcttataacatctttaaagggactctggtcgatccgagctttt
ggaagacaggcttattttgaaacccttttccacaaggccttgaacgttcatactgccaac
tggttcctctacttgtccacgctgcgctggttccagatgaggattgatatgatatttgtc
atcttctttattgttgctgcctttgtttctgttggaacaaacggtattggggaaggaaaa
gttggaataattatgacattagccatgaatattatgagtaccttacagtgggcagtgaac
tccagcattgctatggacagtctgatgcgctctgtgagcaggatattgaaattcatcgac
ttgcctcaagaagcacttaaaatctgtgacaagcagaaaagcagcaagcctgaaagcctg
gttattgagaacccacacacgggtcaggaatggccgtctgcaggccaaatgactgtcagc
aacctaacggcaaagtacacagaaggaggccgaaatatccttgagaacctctcattttca
gtaaacgctggacataggttgggtgttttgggaagaactggttcggggaagagcacgtta
ctgtccgcattgttacggttggtgtcagcaaacggagacatcacgattgatggggtctcg
tggaattcagtccctttgcaggaatggagaaaagcatttggtgttctcccacagaaagta
tttatattctccggaacatttcgtaagaatctggacccacatgggaaatggagcgatgaa
gagctatggagagttactgaagaggtcggtctgaagtctgtcattgagcagtttccagat
aaactggatttcgttctggtggatggaggctatgtccttagtaatggtcacaaacagtta
atgtgcctggccaggtcaatcctgagtaaagccaaaatcctccttctggatgaacccagt
gcacacctggaccccataacctttcagattataaggaagacactaaagcatgcttttgcc
aactgcactgtcatgctgtcagaacacagactggaagccatgcttgagtgtcagtctttt
ctggtgatcgaaggcagttcagtgaaaccgtatgataccattcagaagctcttgaatgaa
tctagtctattgaagcaggcaataagcagtgctgagcgtgtgaattttttccgtctgcat
cgtcggaactccagcaagcgtaagccacggccaaagatcactgcattacaagaggaggca
gaggaggatatacaagacactagactgtaa
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integrated database retrieval system
