Polyodon spathula (Mississippi paddlefish): 121319969
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Entry
121319969 CDS
T07273
Name
(RefSeq) contactin-1-like
KO
K06759
contactin 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121319969
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121319969
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
pspa00537
]
121319969
Cell adhesion molecules [BR:
pspa04515
]
Immunoglobulin superfamily
Contactins
121319969
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
pspa00537
]
Others
121319969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
V-set
Ig_DSCAM-DSCAML_C
Ig_5
Big_3_4
Motif
Other DBs
NCBI-GeneID:
121319969
NCBI-ProteinID:
XP_041113930
LinkDB
All DBs
Position
8:41603953..41699385
Genome browser
AA seq
1009 aa
AA seq
DB search
MQPLTLYLVALSFILCHAEDGTGYGPVFQEQPIDTIYAEESPEGKVTMNCRARGNPAVVY
KWKLNGWDIHVIDTDDHYTMVGGNLIINNPEKSRDEGRYQCVAKNIYGSVISRVVTIKFG
YLDPFLTDERSAVSVKVGQGAVLLCAPPPHYPDDLSYRWLLNEFPIFITLDNRKFVSQTT
GNLYISNVDPADKGNYSCFVSSASIAKSVFSKFISLVPQDEREKVRKYPADIKVRFPDTY
TLVGQNVSLECFALGNPNPKIVWRKVDAPFPSNYEISLSGSVFTIFNVQVEDEGLYECEA
VNAKGKDRHQASVYTEAYPEWAEHINDTEKDIGSDLTLSCEAKGIPKPTIRWLKNGIGYG
KGDLKFYGLTLEDAGMYQCVAENKHGTIYANAELRVIASAPDFELNPVKKKLLGAKGGRA
VIECKPKAAPKPKFSWSKGTELLQNSTRIYIWEDGSLEILNVTVADEGRYTCFAENDRGK
ANSTGTLSVTDVTKITLAPSNADVTVGEKATMQCRATRDPSLDLTYIWSVNSHILDFDKE
KEHYSRNLMNEDRGDLFIANVQLRHAGRYTCTAQTIVDNSSASADLVVRGPPGPPGGVRV
EEIRNSSVKLTWSCGTDNHSPISKYTIQARSMLWEDWRTVKTSPSNIEGNMEAANVIDLI
PWMEYEFRLIATNTLGTGEPSMPSIKIKTLEAAPTVAPSDIGGGGGRNRELTITWTPVSR
EYYFGGNFGYIVAFKPHGDKEWKKVTVASPEARRYVHKDASITPSTEFQVKVKAYNNKGE
GPFSLTAVVYSAQDAPIEAPTGVTARSLSSSEAQVSWVPVTQHTIEGYEVRYWRTQDKEA
AAHRVQVSSLTNSTRLENTLPDAHYHIEVRAFNAAGYGPPSELYDIYTKKAPPSRPPKIV
SKHIVGSQVSIVWEHVEPLANESRIEGYKVLYRQEGQPGGMLYSTGKHYIYVPVPKDGEY
IVEVRAHSEGGDGAVAQVKITGGGPVSVQSASVTSLLFLVLVAICYLEL
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgcaacccctgaccttataccttgttgctttgtcatttatattgtgccatgctgaggac
ggtacgggatatggaccagtatttcaagagcagccaattgatacaatatatgcagaggag
tctcctgaaggaaaagtcactatgaactgcagagcacgagggaacccagctgttgtatac
aagtggaaattaaatggctgggatatccatgtgatagacacagatgatcactacactatg
gtaggggggaacctgatcattaacaacccagagaaaagcagggatgaagggcggtaccag
tgtgtagcaaaaaatatatatggcagtgtgatcagcagagtggtcaccatcaagtttgga
taccttgatccgtttttaacagatgaacgatctgcagtgtctgtgaaagttggacaaggc
gctgtgctgctgtgtgcacctccaccacattatccagatgacttgtcataccgctggctt
ctgaacgagttccccatctttatcacactggataatcgaaagtttgtctctcagacaact
ggcaatctgtacatttcaaatgtggatccagcagacaagggcaattattcatgctttgtg
tccagtgcatctattgcaaaaagcgtcttcagcaagttcatttcactggttccccaggat
gaacgtgagaaagtgagaaagtatccagcagacataaaagttcgattcccagacacctat
acactggttggacaaaacgtgtcgcttgaatgttttgctcttggaaaccctaatcccaaa
attgtatggagaaaagtcgatgcgccctttccaagcaactatgagatcagtttgtctggt
tccgttttcacgatatttaacgtccaggttgaagacgagggcctgtatgaatgtgaagca
gtgaatgcaaaaggaaaagatagacaccaggcaagcgtttataccgaggcttacccagag
tgggcagaacatataaatgacactgaaaaagacattggaagtgatctgactttgtcttgt
gaagccaaaggcattcctaaacctactatcagatggctgaaaaatggaattgggtatggt
aagggtgatttgaaattctatgggctgaccttggaggatgctggaatgtatcagtgtgta
gcagaaaacaagcatggaactatttatgcaaatgctgagttacgtgtaattgccagtgca
cctgattttgaattgaaccctgtgaaaaagaagcttctgggtgctaaaggtggaagagcg
gtaattgagtgcaaaccaaaagctgcccccaaacccaaattctcctggagtaaagggact
gaactgctacaaaacagtacaaggatatatatttgggaggatgggagtctggaaatccta
aatgtcacagtagcggatgaaggaaggtatacatgctttgcagagaacgacagagggaag
gccaatagcacaggcaccctttctgttacagacgtgactaaaattactcttgcaccttct
aatgctgatgtgactgttggagaaaaggccaccatgcagtgtcgtgctactcgggacccc
tcactggatcttacatatatctggtctgtgaacagccacatccttgactttgataaagag
aaggagcactacagtcgaaatttgatgaacgaagacagaggggatttgttcattgcaaat
gttcagttacggcatgccgggaggtacacctgcacagctcagacaatagtggacaattct
tcagcatccgcagacctggttgtgagaggaccaccaggacctccaggtggtgttcgagtg
gaagagatcagaaattcctcagtgaaattgacatggagctgtggaactgacaaccacagc
cctatttccaaatataccatccaggccaggagcatgctgtgggaggactggagaactgtc
aaaacatctccttcaaacatcgaaggcaatatggaggctgcaaatgtaattgatttaatt
ccctggatggagtatgaattccgtttgatagcaacaaatacattagggacaggagagcct
agcatgccatcgattaaaataaagactctggaagcagctcccactgtggctccatctgat
attggagggggtgggggaaggaatcgagagctaacaattacatggacgccggtgtcaaga
gagtactactttggtggtaattttggctacatagtggcctttaagcctcacggtgataag
gaatggaagaaggttactgtggcttctccagaagccaggcgttatgtacacaaagatgcg
tctatcaccccgtccactgaattccaagtcaaagtcaaagcttacaacaacaagggagag
ggtcccttcagtctaacagcggttgtttattcagcccaagacgctcctattgaagcacca
acaggtgtaacggctcggagcttgtcatcctctgaagcccaggtctcttgggtgcctgtt
acccagcacacaatagaggggtatgaggttcgatactggaggacacaagacaaagaagca
gctgcgcatcgagtacaagtatccagtctcactaattcgaccagactggaaaatacactt
ccagatgcacattaccacatagaggtccgagccttcaacgctgcaggatatgggcctccc
agtgagctctacgatatctacacaaagaaagcacctcctagccgtcctccaaaaatagtc
agcaaacatattgtcggttcccaagtgagcatcgtctgggagcatgttgaacctttggct
aatgaatctagaattgagggatacaaggtgctgtacagacaagaaggacagccaggagga
atgttgtattcaaccggtaaacactatatatatgtaccagttccaaaagatggcgagtat
attgttgaagttcgtgcacatagtgaaggaggagacggagcagtggctcaagtcaaaatc
acgggtggaggacctgtaagtgtacagtctgccagtgtcaccagtttgctgtttttggtc
ctggttgctatttgttacctggagctgtga
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