Polyodon spathula (Mississippi paddlefish): 121319970
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Entry
121319970 CDS
T07273
Name
(RefSeq) PDZ domain-containing RING finger protein 4-like
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121319970
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121319970
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
121319970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
121319970
NCBI-ProteinID:
XP_041113935
LinkDB
All DBs
Position
8:41798720..41842525
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AA seq
776 aa
AA seq
DB search
MGCNLCSLQKKEEHYKLLYEIAQVNGRDLLKATHEEAVGAFRSAKEPIVVQVLRRAPITK
NHGTSQEIHLVDVCTQTDITFEHIMALSKLRPSTPPVPDICPFLLSDSCHSLHPMEHEYY
EGNEFLSSMPADADQTQEFEYEEVELCRVNSQEKLGLTLCYRTDDEEDMSIYVSEVGPNS
IAARDGRIKEGDRILQINGHDVQNREEAVALLSSEDCRNIVLLVARPEIQLDEGWLDDER
NEFLEELNMEMLEEQHHEAMQYTASELEQPKKSEEDGGTTDTATTSSNTQEKDSGVGRTD
DSLRNDESSEQENQRDSQKQFSLQDKRELGQSQDTLVSNEMPCNGSFVSGEYIDSDCTAA
QDEDCERFRQLLELKCKIRNSGECDLYYSRSSTIECSLKEPNGVERELQLLNEELRNIEL
ECQNIMQAHKHQNARGQYADVWSIEEEGYRDYNTSDDLQRAKLADIIEHPEKSDKDSSSA
YNTAESCRSTPLKVGRSPDNSLQRMINITNKKNLRSTIAAQQMTARQDSKEACLAKTKSS
DNSAEQQDNAPESNKLTERERSSVPQIPYLSPCHSSQYRHTNIPTHARHYQSYMHLIQQK
SAVEYAQSQLSIVSMCKDLQKSAEPKMEWKVKVRSDGTRYITKRPVRDKILKERALKIKE
ERSGMTTDDDTMSEMKMGRYWSKEERKQHLMRAKEQRRRREFMMRSRLDCLKESPQSGSE
GKKEINIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPEDPQVHNAFLSVTTV
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatctgtgctctttacagaaaaaagaagaacactacaaactgctctatgaa
atagctcaggtcaatgggagggatctgttgaaggccacgcacgaggaagctgtaggagcc
tttcgcagtgccaaggaaccaattgtagttcaagttttaagaagagctcccatcacaaag
aatcatgggacatctcaggaaatccatctggtggatgtttgcactcagacggacattact
tttgaacacattatggctctctccaagttaaggccatcgactcctcctgtacctgacatc
tgccccttcctgctttctgacagctgtcactcactacatccaatggagcatgaatattat
gaaggaaatgagtttctctcgagcatgcctgctgatgcagaccagacacaggagtttgag
tatgaggaagttgaactgtgccgtgtcaacagccaggagaagcttggacttaccttgtgc
tataggactgatgatgaagaggatatgagcatctatgttagtgaggttgggccaaacagc
attgctgccagagatggtcgtatcaaagaaggggatcgaattttacagataaatggtcat
gacgtccagaatcgcgaggaagcagtggcattactctcaagtgaagactgccgaaatatt
gtgctgctggttgccagaccagaaatacagctggacgaaggctggctggatgatgagaga
aatgaattcttagaagagctgaacatggagatgttggaggaacaacaccacgaagcaatg
caatatacagccagcgaactggagcagccaaagaaaagtgaggaagacggtggaacgaca
gacacagccaccacctcttccaacacccaggagaaggacagcggggtgggccgcactgat
gacagtctgcgcaatgacgagagctctgagcaggagaaccagagggacagccaaaagcaa
ttttcgctgcaggacaaacgagagctgggccagagtcaggacacgctggtgagcaatgag
atgccgtgtaacgggagctttgtgtctggtgaatatatcgactcagactgcactgcagcc
caggacgaggactgcgagaggttccgccagctgctggagctcaaatgtaagataagaaac
agcggcgagtgtgacctttactacagccgcagcagtaccatcgaatgcagcctcaaggaa
ccaaatggggtagaacgggagctacagctgctcaacgaagagcttcgtaacattgagctg
gagtgccagaatatcatgcaggctcacaagcatcaaaatgcaaggggtcaatatgccgat
gtctggtcaatcgaagaagaaggctatcgagattataacaccagtgatgacttgcagaga
gctaagctagcggatatcatagagcatccagaaaaatcggacaaggacagctccagtgca
tacaacacggcagagagctgtcgcagtacgccactgaaggtgggtcgctcaccagataac
tccttgcagcgaatgatcaacattacgaacaagaagaacctgaggagtaccattgcagca
caacaaatgactgccagacaagacagcaaagaggcatgtctggctaaaactaaaagttca
gacaattcagcagagcagcaggataatgcacctgaaagcaacaaacttactgagcgtgag
aggtccagtgttccacagattccgtatctttcaccatgccacagttcccagtacagacat
accaatatacccactcatgccaggcactaccagagctacatgcatctcatccagcagaaa
tctgctgtggagtacgcccagagccaacttagcattgtgagcatgtgcaaagacttgcag
aagtctgcggagcctaaaatggagtggaaggtcaaagtccgtagtgacgggacgagatac
atcacaaagaggccagtgagggacaaaattcttaaagagcgtgccttgaagatcaaagag
gagcgcagcggaatgacgacagatgacgacacaatgagtgagatgaagatgggcaggtac
tggagcaaggaggagaggaagcagcacttgatgagggccaaagagcagaggagacgacgg
gagttcatgatgcgcagcagactggactgcctcaaggaaagccctcaaagtggcagcgaa
gggaaaaaggaaataaacattattgaactgagccataaaaagatgatgaaaaagcggaat
aagaaaatcttggacaattggatgacaatccaagaactgatgacccatggggccaagtct
cccgaggacccacaagtacacaatgccttcttgtctgttaccactgtataa
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