Polyodon spathula (Mississippi paddlefish): 121320017
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Entry
121320017 CDS
T07273
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121320017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121320017
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121320017
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GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
121320017
NCBI-ProteinID:
XP_041114061
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Position
1:56935353..56983906
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AA seq
566 aa
AA seq
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MSAEETDKSMVTDTSAPAGDEDGDGDGDGDEEEEWLYGDENETKEEEEEATPVTVSAFPP
PTAEEEATGNGVAKQDTAAEDDEDTDSDSDDDDDDVRVTIGDIKTGAPQYAAYGGAPVNL
NIKTAGRPYGAVGKSKGIDLEAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFN
EDTWKAYCEKQKRLRMGLEVATATSTSSKITVQQGRTGNAEKEVGLPTPKVDFTSPTNIF
KPGIPPSRISPTHWSGGPASQDTSFYTKVPGTINVIGGQTATISRVEGRRRHNNDSNNIQ
VISEHSTSDADAAPAPAPAPAPAPAKLPPFFPPGSLPPNIPPPPFLPPPPNVGTAPPLIP
PPRIPITVPPPGFPPPPSLIPTLDGGHAGSYDGRSVPPYPFNPGYPHLAGAVASWSNIID
SSKQWEYYSRREKERDREKERERERPRERGHERERERERDHSPASMAYNSDEERFRYREY
AERGYERHRERSSREKEDRHRERRHRDKEESRHKSSRSSSRRGHDSEEGDGHRRHKHKKS
KRSKEGKEASDDHAPEQDHSEAAGLD
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgaagaaacggataaatcgatggtgactgatacaagtgcaccagcaggagat
gaagatggagatggagacggtgacggcgacgaagaggaggaatggctttatggggatgaa
aatgaaacgaaagaggaggaggaggaagcgacaccagtcactgtcagtgcatttcctcca
cctactgctgaagaggaagccactggaaatggtgtagcgaagcaggacacagcagcagaa
gatgatgaggacacagatagcgacagtgatgatgatgacgatgacgttcgtgtcaccatc
ggggacattaaaacaggggctcctcagtatgcagcctatggtggggcaccagtgaatctc
aacattaagacagctggaaggccgtatggggcagtaggaaaatcaaagggaatcgatctt
gaagcaccaggaagtatcaatggggttccactattggaagtagacttggattcttttgaa
gacaaaccctggagaaaaccaggtgctgatctatctgattatttcaactatgggttcaat
gaggacacttggaaggcctactgtgagaaacagaagagactcagaatggggcttgaagtt
gcaacagctacctcgacaagcagcaaaattacggttcagcagggaagaactggaaatgct
gaaaaggaagtcggtttaccgacacctaaagttgattttacctctcctactaacatcttc
aaaccaggaattccaccgtccaggatttctcccactcactggtcaggaggcccagcttct
caagatacatcattttatacgaaggtaccaggaacgatcaatgtgatcgggggacagact
gccaccatcagccgcgtcgaggggcggcgccgacacaacaacgacagcaataatattcag
gtcatttcagaacattccacctcagatgcagatgctgcacctgcgcctgcgcctgcacct
gcacctgcacctgccaagttgcctccatttttcccacctggatctctgcctccaaatatc
ccccctcccccatttctaccacctccccccaacgtcggcactgcacctccactgattcct
ccaccaagaattcccatcactgtaccacctccaggttttccaccaccaccatcacttatt
ccaacactggatggtggacatgcaggaagctatgatggtcgctcagttccaccgtatccg
tttaaccctggctatccccatctcgctggcgcagttgcatcgtggtctaatatcattgac
agctccaagcagtgggaatactattcaaggagagagaaggagcgggacagagagaaggag
cgtgagcgagagcgtccaagagagagaggtcatgagcgggagagagagcgagaacgggat
cacagtcccgcctccatggcttacaacagtgatgaggagcggttcaggtacagagagtat
gctgagagaggctatgagcgtcacagggagagaagcagcagggagaaggaagaccgacac
agagaaagaagacatcgggacaaagaagagagtcggcacaagtcatctcggagcagcagc
aggcgaggtcatgatagcgaggaaggagatggccatagaagacacaaacacaagaagtct
aaaagaagtaaagaaggaaaggaagccagtgatgatcatgctcctgagcaggaccattca
gaagctgcaggccttgactaa
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