Polyodon spathula (Mississippi paddlefish): 121320068
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Entry
121320068 CDS
T07273
Name
(RefSeq) CCR4-NOT transcription complex subunit 2-like isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121320068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121320068
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121320068
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121320068
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
121320068
NCBI-ProteinID:
XP_041114162
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Position
8:complement(47577301..47613434)
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AA seq
591 aa
AA seq
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MVLQVAGRSEGKGYSPSILGCRIHSHLGSAGRREINAVTNSMFGASRKKFEGVESDYHDD
SMYYSQSSIFPPHRSEKDMLQSPSPSTSGQLSQLGASLYGPQSCERSIIEEARWDALARG
EAGALGVQMRGMNNNNPQLNRSLSQAPQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPR
NMMNHSQVGQGIGMPGRTNSISSSGLGSPNRSSPSIICMPKQQPSRQPFTINSMSGFGMN
RNQSFGMTNSLSSNIFNGTDGSENVTGLDLSDFPALADRSRREGSGNPTPLLNPLAGRAP
YGEHFFEVGMVTKPASEQSQDFSIHNEDFPALPGSSYKDPTSSNEDSKSNLNSSSKNASS
TDGPKFPGDKGSTVQNNNQQKKGIQVLPDGRVTNIPSGMVTDQFGMIGLLTFIRAAETDP
GMVHLALGSDLTTLGLNLNSPENLYPKFASPWASAPCRPQDIDFHVPSEYLTNIHIRDKL
AAIKLSRYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKT
NSYERGTYYFFDCLNWRKVAKVKEFHLEYDKLEERPHVPSTFNYNPAQQAF
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggttttgcaggtcgcggggaggtcagagggtaaaggctattcacccagcatcctcggt
tgtagaatacacagccatcttggatctgcggggagaagagaaattaatgcggtgacaaac
agcatgtttggtgcttcaagaaagaagtttgagggggtcgaaagcgactaccacgatgac
agcatgtactacagccagtcgtccatcttcccacctcatcggtcagaaaaagacatgctg
cagtctccatcaccatcaacgtcaggtcaactgtctcagttaggtgcaagtttatacggc
ccacaaagctgtgagcgctccataattgaagaggcaaggtgggatgccctggcgaggggg
gaagcaggtgcactaggtgtccaaatgagggggatgaacaacaacaaccctcagttaaat
cgcagcttatcacaagctccccagttaccgagccatgtaactccgacgacaggagtgccg
accatgtctctccatactccaccgtcaccaagcaggggcattttgcccatgaatcccagg
aatatgatgaaccactcccaggtcgggcagggaattggcatgccaggacggacgaacagt
ataagcagttcagggttaggcagtccaaacagaagctcacccagcataatatgtatgcca
aagcaacaaccctctcggcagccctttaccataaacagtatgtctggatttggaatgaac
aggaatcagtcgtttgggatgaccaactcgttatcaagcaacatttttaatgggacagac
gggagtgaaaatgtgacggggttggacctctcagactttcctgcactagcggacagaagt
agaagggaaggaagcggcaatccaactccgttgttaaatccattggcagggagggctcct
tatggtgagcatttttttgaagttgggatggtaacaaaaccagcaagtgaacagtctcaa
gatttctccatccacaacgaggatttccctgcattgccaggctccagctataaagatcct
acgtcaagtaacgaagacagtaaatccaacttgaactcttcgagcaagaatgcgtctagt
acggatggacctaaattccccggggacaagggttcgactgtgcaaaacaacaaccagcag
aagaaaggcattcaagtgttacctgacggccgggtgactaacattccttcagggatggta
acggaccagtttggaatgatcggattgttaacattcatccgggcagcggagacggaccct
ggaatggtacaccttgcattaggaagtgacctgacaacactaggtctcaatctcaactct
ccagaaaatctctatcccaaatttgcatctccatgggcatcagcaccttgtcgacctcaa
gatattgacttccatgttccatccgagtatttaacgaacattcacataagggataagctg
gctgcaataaaactgtcccgatacggagaagatcttcttttctacttgtactacatgaat
ggaggagaccttttacaacttttagcggcggtagagctgttcaaccgagactggagatac
cacaaagaagagagagtgtggattaccagggcgccaggaatggagccaacaatgaagacc
aattcctacgagagggggacgtactacttctttgattgtcttaactggaggaaggtagct
aaggtaaaggagtttcacctggaatacgacaaactagaagaaaggcctcatgtgccgtca
accttcaactataatccagctcagcaagccttctaa
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