Polyodon spathula (Mississippi paddlefish): 121320078
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Entry
121320078 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 6-like
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
pspa03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121320078
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121320078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121320078
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
121320078
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Ortholog
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Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
121320078
NCBI-ProteinID:
XP_041114190
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Position
8:complement(47774426..47795296)
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AA seq
591 aa
AA seq
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MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDREYMDSHPTAG
GDDGGKGPSSNVVYTYTGKRIALYIGNLTWWTTDEDLTDAIQSVGINDVLEIKFFENRAN
GQSKGFALICVGSEASSRKLIDLLSKRELHGQNPIITPCNKQSLSQFEMQSRKSTQSGQM
SGEGKAGPPGVNSRGGFTLGRGRGRFPGPPGPGGDRFPGPGGPGGPPPPFPGSGLRLPEL
ISHRLQDSHLMEMSFNCFQPGRDSNWRPRGAMQGPPRPPLGPPGPPGHPGPPPPGQNMLP
PLSGPPNRGDRPPPPVMFPGQPFGQPPMGGSPPSPGPPPPVPGYGLPPGPPPPQEQGPPP
PPGPFPPRPPGPIGPPLPXGPPPHLSGPPPGAPPPAPHVNPAFFPPPNNSGMPSSDSRGP
PPPDPYGRPPPYDRGDYGPAGREMDAARTPLSEAEFEEIMNRNRAISSSAISRAVSDASA
ADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRERSRERD
HSRSREKSRRHKSRSRDRHEDYYRERSRDRERHRERDRDRERDREREYRHR
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggagtggatcacatcgacatatacgctgatgtgggcgaagaattcaaccag
gaagctgaatatggtggccatgatcagatagatctgtatgatgatgtcatatctccatct
gcaaacaatggggatgctccagaggaccgggaatacatggattcccacccgactgccgga
ggagacgatgggggtaaaggaccctcctcaaatgttgtctatacgtacactgggaagagg
attgccctctatatcgggaatctcacctggtggacaactgatgaagacttgacagatgcc
attcagtctgttggaataaatgatgttttggagattaagttctttgaaaaccgggctaat
gggcagtcaaaggggttcgcccttatttgtgttggatccgaggcgtcttccaggaaactg
atagacctgctttccaagagggaacttcacggacagaaccctatcattacgccatgcaac
aaacagtcactgagtcagtttgaaatgcaatccagaaaaagtacacagtcaggacagatg
tctggtgaaggcaaagctggccccccaggagttaattcccgtggaggattcaccctggga
agaggacgagggcgcttcccaggacctcctggtcctggtggggacaggttcccagggcct
ggtggaccaggaggtccacccccaccattcccaggatctgggctgagactacctgaactc
atttcacataggctccaggacagccatctgatggaaatgagtttcaattgcttccaacct
gggcgggattcgaactggcgacccagaggagcaatgcaaggaccacctcgcccccctctc
ggccctcctggtccaccaggccaccccgggccacccccacctgggcagaatatgcttcca
ccgctctcagggcccccaaaccgtggtgaccgccctccaccaccagtcatgttccccgga
cagccgttcgggcagccccccatgggtgggtcccctccctcccccggcccccctccccca
gtcccgggctatggactgcctccaggcccccctcccccccaggagcagggtcctccccca
ccccctggaccattccctccccgtccgccaggccccatcgggcccccattgcccnntggc
ccccccccacacctctctgggccccctccaggggctcctccaccagcaccccatgtcaac
cctgcattcttcccaccccctaacaacagcggcatgccctcctctgacagccggggccct
cctcctcctgatccttatggccgcccgccaccttatgacagaggggactatggtccagct
ggcagggaaatggatgccgcacgaactccattgagcgaagcagagtttgaagaaataatg
aaccggaatcgagcaatctccagtagtgccatatcaagggctgtttcagatgccagtgca
gctgactatgggagtgctatagagacgttggtaactgctatttctttaattaagcagtcc
aaagtatcagccgatgaccgctgtaaagtgctgatcagttctttacaggactgtctgcat
ggaattgagtccaagtcctatggctctggctccagaagggagaggtccagggagagggat
cacagccgctcgcgggagaagagcaggcgccacaagtcacgcagccgcgacagacatgaa
gactactaccgggaaagaagtcgggaccgcgagaggcacagggagcgagaccgagaccgg
gagcgtgacagggagagggaataccgtcaccgctag
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