Polyodon spathula (Mississippi paddlefish): 121320366
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Entry
121320366 CDS
T07273
Name
(RefSeq) protein Atg16l2-like isoform X1
KO
K20868
autophagy-related protein 16-2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121320366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121320366
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121320366
Membrane trafficking [BR:
pspa04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
121320366
Others
Specific organelles associated proteins
Auto phagosome
121320366
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
121320366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_DCAF12
WD40_RFWD3
NBCH_WD40
Beta-prop_NWD2_C
Ge1_WD40
Beta-prop_Nup120_160
Beta-prop_HPS5
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
121320366
NCBI-ProteinID:
XP_041114542
LinkDB
All DBs
Position
9:complement(6163254..6175086)
Genome browser
AA seq
321 aa
AA seq
DB search
MYLSLVRDLFGWLMILRNNVIVFLPTWLSACLTVCLGPHILDMSFWICPLYCTLKLLYCY
MLHFLFTGKLHSAGTLEGSNEGITSIEFDPTGTKVLAASYDKSALFWKLDDCAPKFTLTG
HSRKVTSAKFKSSLRQAVTGSADRTVKIWDLQRAACVKTINVFSFCSDVVCSEYFIVSGH
FDKKIRFWDSRAASCTQEVPLQGKVTSLEISPDHTQLLSCSRDECLQVIDLRMNNIRKSF
RAEGFKCGSDWTKAIFSPDGSYVTAGSSDGAVYVWNVNSGLLETCLPEQHSSSVNAVSWS
LSGEYVVSVDRSRRAVLWSDI
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgtatttgtcattggtcagagatctttttggttggcttatgattctccgtaataacgta
attgtctttttgcctacctggctttctgcctgtttgactgtctgtctgggaccacacatc
cttgatatgtctttctggatttgtccactgtactgtacattgaaacttctttactgctac
atgttacatttcctgtttacaggaaagctgcacagcgcaggaacactggagggcagtaat
gaagggataacaagcatagagtttgacccgactgggaccaaagttttagctgcctcatat
gacaagtcggctctgttttggaaactggatgactgtgcacctaaattcacattgactggt
cattctcgtaaagtgacatcagccaaatttaaatcaagtcttcgtcaggctgtgactggc
agtgcggatcgaacagtgaagatctgggatctacaaagggctgcctgcgtgaagaccatc
aatgttttctccttctgcagtgatgtcgtctgctcagagtactttattgtgagtgggcac
tttgacaagaagatacggttctgggacagcagagctgcaagctgcacgcaagaagttcct
ctccagggaaaagtgacatcgctggaaatcagtcctgaccacacacagctactcagctgc
tcccgggatgaatgtcttcaggtgattgacctcagaatgaacaacatcaggaaatctttc
agggctgaggggttcaagtgtggctctgactggacaaaggcaatatttagtcctgatgga
agctatgtgactgcaggctcctcagatggggctgtctatgtctggaatgtgaactcggga
cttctggagacctgcctacctgaacaacacagctcttctgttaatgcagtttcctggtcc
ttgtctggggagtatgttgtaagtgtggacagaagtagaagagctgtcctctggagtgac
atatga
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integrated database retrieval system
