Polyodon spathula (Mississippi paddlefish): 121320406
Help
Entry
121320406 CDS
T07273
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 16-like isoform X1
KO
K11844
ubiquitin carboxyl-terminal hydrolase 16/45 [EC:
3.4.19.12
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
121320406
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pspa01002
]
121320406
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121320406
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
121320406
Peptidases and inhibitors [BR:
pspa01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
121320406
Ubiquitin system [BR:
pspa04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
121320406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
RMI1_N_N
Motif
Other DBs
NCBI-GeneID:
121320406
NCBI-ProteinID:
XP_041114632
LinkDB
All DBs
Position
9:12987231..13004129
Genome browser
AA seq
840 aa
AA seq
DB search
MGKKRGQEKDYKDDAPPEFTDSRCPHTRKVLDLSLIKKAVQDGMLNACQDCKGDEKEGDS
IEIENTESPLIWVCLKCGHRGCGRDSDQQHAIKHFEKSHSDPHCLVVSLENWNIWCYLCD
DDVPYSSTGWLSQFVTYIQKQALLSEPTRKTTNKTVKEHENQIHKLENKNEQQKDSKKGG
TRTEEKEKPHKEIPQKNTSLTVKGFNNLGNTCFFNAVMQILSHTELLKELLRDLKDNETT
IKITPHLSSELGPIIINVDKPGSLTLAMCQFLTKIQETKKSVVTPKELFSQVCKKAARFR
GFQQQDSHELLRYLLDGMRSEEIKRKSAGIFKTLNDSGKQEDAEESKKLIKEYEKKGELQ
NFVDQVFGGELTSTIMCEECKTISLVTEMFLDLSLPVSDEAYRKKSLKKSERKPSINEDE
DYGVSPASNADNGIPTATSSKYQLKKDKKHAKKQAKNQRRQQKHEGKVLLAHATEQNSEE
HQNGEESSSQGNLSQPDTENLKELNGCTDSSEPVLQNEKEVSDTELCEDTSSSGHDNANE
HTEAEKNNTDGHQLDPLENLPEPSNTTTVHFKQFSVLTPDENLVQDLSKISLNGNIVSHD
DIELEIGNCDGPFDAKEYTVANQDPVVAFCTLANRETPGKQESSTQSCLYQFTQKEKLTG
TNRLRCNTCSQRKYKEPKSSIGDKKSVYTDAQKQMLISMAPPVLTLHLKRFQQVGSSACK
VNKQVRFPQILDLAPFCTVNCKNVAGDKGVLYSLYGIVEHSGTMRSGHYTAYVKVKSNCH
LSEHLNGMTPQVSEAESLKGSWFHISDSRVQAVPESKVQNSQAYLLFYERILHQTHTDKH
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaagaggggacaagaaaaagactataaagatgatgctcctcccgagtttaca
gattctcggtgcccacacactcgcaaagtattagatttgagcctgattaaaaaggcagta
caggatggaatgttgaatgcgtgccaagactgtaagggtgatgaaaaagaaggggacagc
attgaaatcgagaacactgagagcccattgatttgggtttgtctgaaatgtggtcatcgg
ggttgtggaagagattctgatcaacaacatgccattaagcactttgaaaaatcacactcg
gacccacactgcttggtagttagtttggaaaactggaacatttggtgttacctttgtgat
gatgatgtgccgtattccagcaccgggtggttgtcacagtttgtaacttatattcaaaag
caagctcttctttcagaaccaaccaggaaaactacaaataaaactgttaaagaacatgaa
aaccagatacataaactagaaaataagaatgaacaacagaaggacagtaagaaaggtgga
actagaacggaagaaaaagaaaagcctcacaaagaaatacctcagaaaaacactagttta
actgtgaaaggattcaacaatcttgggaatacatgtttctttaatgcggtcatgcagatt
ctatcgcatactgaacttctaaaggagcttctcagagacctgaaagacaatgaaaccacc
atcaagattacaccacatctgtcttctgagctggggccaatcataataaatgttgacaaa
ccagggtctctgacattggccatgtgtcaatttctcactaaaattcaggaaaccaagaag
agtgttgttactcccaaagaactgttctcccaggtctgtaaaaaggctgcccggtttaga
ggatttcagcagcaggatagtcatgaactccttcgctatctgctggatggaatgaggtct
gaagaaatcaagcgaaaaagtgcaggcatctttaagacattgaatgattctggaaaacaa
gaagatgcagaagaatcaaagaagttgataaaagaatatgaaaagaagggggagcttcag
aactttgtagaccaggtttttggaggagagttaacaagcaccattatgtgtgaggaatgc
aaaactatatctttggtaacagagatgttcctggatttgtctctacctgtttcagatgag
gcttacagaaagaagtcgctgaagaaaagtgaaagaaaacctagcataaatgaagatgaa
gattatggtgtttctcctgcaagtaatgcagataatggaatccccactgccaccagtagc
aaataccagctaaagaaggacaagaagcatgccaaaaaacaagcaaagaaccagcgaagg
caacaaaagcatgaaggaaaggtgttacttgcccatgcaactgagcagaattcggaggaa
catcagaacggtgaagagtcctcatctcagggcaacctgagccagccagacacagagaac
ctaaaagaactaaatggatgtactgacagcagtgaaccagtgttgcagaatgaaaaagaa
gtaagcgatacagagctttgtgaagacaccagcagttctgggcatgacaatgcaaatgaa
cacacagaagctgaaaagaacaacacagacggtcaccagttagaccctctagagaattta
ccagaaccatctaataccactacagtacactttaaacagttcagtgtacttactcctgat
gaaaaccttgttcaagatttaagcaaaataagcctgaacggtaatattgtttcccatgac
gatatagagttagaaattggtaactgtgacggtccttttgatgccaaggaatacacagtg
gctaaccaagacccagtggtggcattttgtactctcgccaaccgagaaactccaggaaag
caagaaagttcaacccagtcctgcctgtatcagtttacacaaaaagagaaactcacagga
acaaacaggcttcggtgtaatacttgctcacaaagaaagtacaaggaaccaaaatccagt
ataggtgacaagaagagtgtgtacactgatgcccaaaaacagatgttaatttctatggcc
cctcctgttcttactcttcatttaaagagattccaacaggttgggtccagcgcatgcaaa
gtaaacaaacaggtgcggtttcctcagattcttgatttggcccctttctgcacggtgaac
tgcaagaatgtagcaggtgacaaaggggtactgtacagtctgtacggaattgtggaacac
agtggtactatgaggtctggtcattatactgcctatgttaaagtcaaatctaactgccac
ctttcagagcatcttaatggcatgaccccacaagtgtcagaagcagaatcattgaaagga
tcttggttccatataagtgactcaagagttcaagctgtgcctgaaagtaaagtacaaaac
tcacaagcctacctcttgttctatgagaggattctccaccagacacacacagacaaacac
tga
DBGET
integrated database retrieval system
