Polyodon spathula (Mississippi paddlefish): 121320468
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Entry
121320468 CDS
T07273
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pspa03037
]
121320468 (ift88)
Cilium and associated proteins [BR:
pspa03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
121320468 (ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_19
TPR_14
TPR_7
TPR_6
TPR_16
ANAPC3
TPR_11
TPR_9
ARM_TT21_4th
TPR_10
TPR_CcmH_CycH
TPR_17
TPR-S
ARM_TT21_5th
ARM_TT21_N
TPR_15
RNPP_C
ARM_TT21_C
DUF6584
HAT_PRP39_C
RPN7
Coatomer_E
DUF2526
MIT
HEAT_Nup120
DUF5588
ARM_TT21_2nd
DUF6435
Motif
Other DBs
NCBI-GeneID:
121320468
NCBI-ProteinID:
XP_041114742
LinkDB
All DBs
Position
9:19048743..19123744
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AA seq
842 aa
AA seq
DB search
MMEHVHLAAEDEDDLYSGYNDYNPTFDTEDLENDVGFQQAVKTSHGRRPPMTAKIPGSAI
ARPMGTGFGARMGLVSSLGRPMTAAVQDGVARPMTAVLAAGYSSAVIRGSAFDPLGQSKG
PAPPLEAKNEDTPEEKIKQLEKKVNQLIEDSCIAHSNGDLQLSLEKAKEAGRKERFLVRQ
REQTASADHINLDLTYSVLFNLANRYADNEMFAEALNTYQVIVKNKMFSNAGRLKVNMAN
IYFKQRNFPKAIKFYRMALDQISNAHRDMRFHRIKIMQNIGVVFVKMGQYSDAITSFEHI
MSESPNIKTGFNLILCYFAIGDRDKMKKAFQKLICVPLGIDEDDKYIPPNDDPQTNLVIE
AIKNDQLRQMERERKALAEKYIMTSAKLIAPAIETSFAAGFDWCVEMVKTSMYVELANDL
EINKAITYLRQKDFNQAVETLKMFEKKDSRVKSAAATNLSFLYFLEKEYGQAERYADLAM
NADRYNPAALINKGNSVFVNGDYEKAGEFYKEALRNDSSCTEALYNLGLTYKKLKRLEEA
LDCFLKLHAILRNSAQVMFQLTSLYESLEDPNQAIEWLMQLISVAPTDPQALAKLGELYD
NEGDKSQAFQYYYESFRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERAALIQPTQVKWQ
LMVASCYRRSGNYQKALETYKDIHRKFPENVECLRFLVRLCTDMRLKEVQEYATKLKKVE
KMKEIREQRVRSGRDGSARGHREGSASSVFSPESIHSFLLEQMGDSGHSSRGTSAKAERM
NAKLRSLPGANEPYEASSNKDIDASYVDPLGPQIERPKTAAKKQMDEDDFADEELGDDLL
PQ
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgatggagcatgtacatttagctgctgaagacgaagatgatctgtattcagggtacaat
gactacaatccaacatttgatactgaagatctggaaaatgatgttggtttccaacaagct
gttaagacaagtcatggaaggagacctccgatgactgccaaaattccaggcagtgccatt
gcaaggcccatgggcactggatttggagcaaggatgggactagtctcctctttgggaaga
cccatgacagctgcggtgcaggatggagttgctcgtccaatgactgcagtgctggctgct
gggtattcatccgcagtaataagaggttctgcatttgatccactaggtcagtcaaaaggt
cctgcacctcctttggaagccaaaaatgaagatacacctgaagaaaaaattaagcagttg
gagaagaaagtcaaccagttaatcgaagacagctgcatagctcacagcaatggagatctt
caactgtctttggaaaaggcaaaagaagctgggagaaaagaaaggtttttggtgcgacag
cgtgagcaaactgcatctgcagatcacattaatttggaccttacatactctgtcttgttt
aatttagcaaaccggtatgcagacaatgaaatgtttgctgaagcactgaacacataccaa
gtgattgtgaaaaacaagatgttcagtaatgcaggacgattaaaagtaaacatggcaaac
atatacttcaaacagaggaatttcccaaaggcaatcaaattttacagaatggcattagac
caaatttccaatgcccacagggacatgcgtttccacaggattaaaataatgcagaacatt
ggagttgtttttgtaaagatgggccagtattctgatgcgattacttcctttgagcatatc
atgagtgaaagccctaacataaaaacaggcttcaacctcatcctttgctactttgctatt
ggagatcgggacaagatgaagaaagctttccagaaactgatctgtgttccacttggtatt
gatgaggatgacaaatacatccctcctaatgatgacccacaaacaaacctagtgattgaa
gcaattaagaatgaccaactacgacaaatggaacgagagagaaaggctttggctgagaaa
tacatcatgacttcagccaagctaattgcaccagcaattgaaacttcttttgcagcagga
tttgattggtgtgtagaaatggtaaaaacctccatgtatgtggaactggcaaatgacctg
gaaatcaacaaagccatcacctatctgaggcaaaaagacttcaatcaggcagtggaaaca
ttgaaaatgtttgagaaaaaggacagtcgtgtgaaaagtgcagctgctacaaacctttca
ttcctttattttctggaaaaagagtatggacaagcagaaagatacgcagacctggctatg
aatgctgatagatataaccctgctgcactcatcaacaaagggaactctgtatttgtaaat
ggtgactatgaaaaggctggagagttttacaaagaagccctgagaaatgactcttcctgc
actgaagcgctgtataacttgggactgacctacaagaagctgaagagacttgaagaggct
ctggactgcttcctaaagctccatgccatcctgcgaaacagtgcccaggttatgttccag
ctaacaagcctgtatgaaagtttagaggatcctaaccaggctattgagtggctgatgcag
ctcatcagtgtagctccaacagatccacaagcactggctaaactgggagaactgtatgat
aatgagggagacaagtcccaggccttccagtactattatgagtcatttaggtatttccct
tcaaacattgaagttatcgagtggcttggggcgtattacattgacacacaattctgtgaa
aaagcaattcagtactttgaaagagcagcccttattcagccgacccaagtaaaatggcaa
ctaatggtggccagctgctacagaagaagtggaaactaccagaaagcactggagacctac
aaagacatccacaggaaatttcccgaaaatgttgaatgtttgcgattcttggttcgcctg
tgcactgacatgagattaaaagaagtacaggaatacgctactaaactgaagaaagtggag
aaaatgaaggagataagagagcagcgtgtgaggtctggcagagatggcagtgcccgtggc
cacagagagggcagtgctagcagtgttttctctcctgaaagtatacacagttttttactg
gaacagatgggagacagtgggcacagtagccgtggcaccagtgccaaggcggagaggatg
aatgccaaactacggtctttgcctggagccaatgaaccttatgaagccagcagcaacaaa
gacatagatgcctcttatgtcgatccccttggccctcaaatagaaagaccaaaaacagcc
gccaagaaacagatggatgaagatgactttgctgatgaagagctgggagatgatctcctt
ccacaataa
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