Polyodon spathula (Mississippi paddlefish): 121320533
Help
Entry
121320533 CDS
T07273
Symbol
chd1l
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like
KO
K20092
chromodomain-helicase-DNA-binding protein 1-like [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121320533 (chd1l)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121320533 (chd1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
DEAD
LIG3_BRCT
BRCT
SWI2_SNF2
AAA_22
ERCC3_RAD25_C
BRCT_2
Motif
Other DBs
NCBI-GeneID:
121320533
NCBI-ProteinID:
XP_041114869
LinkDB
All DBs
Position
9:24130871..24170372
Genome browser
AA seq
999 aa
AA seq
DB search
MSQFLQNVKQKIKPKQPKGGIQEQDLGTWGLTGIKLRSYQLDGLNWLVQCFNNQHGCILG
DEMGLGKTCQTISLLVYAVGSLNEKGPFLILSPLSVISNWKEELERFAPKLSVVVCTGDK
EERAELHRDLKNRSDFHILLTTYEICIRDACFLKRFDWRVLVVDEAHRLKNQNSLLHKML
SEFSVGFTLLLTGTPVQNSLQELFSLLSFIEPQVFPEHEAEGFVTSYKDVETQKERAAEL
HSLLQPFLLRRVKTDVAAELPKKSELVVYHGMSALQKKYYKAVLTKDLDAFDNERGSKAR
LSNILIQLRKCVDHPYLFDGVEPEPFEIGDHLIEASGKLHLLDTMLSFLNDRGHRVLLFS
QMTRMLDILQDYMEYRGYSYERLDGSVRGEERHLAIKNFSSKDVFVFLLSTKAGGVGMNL
TAADTVIFVDSDFNPQNDLQAAARAHRIGQKRPVKIIRLIGRDTIEEIVYRRAMSKLKLT
NTVIEGGQFSHRDEGDSSMAADMQLSEILKFGVDKLLSSEESTIRDVDLGKILGKTRNGE
WVTEDPPLPTEDESSESEETETHMYLYEGKDYSKEPSAEDKKTFEHLLDLENVVLADAGR
KGRALRNKSDVLLSGLPDVTTSRKRVLTPEELHQRRQKRQVAAAKRAKLMEDKKKQQKEA
EHKKKLAWWESCGYRSLCVSSEDSEEEEGGSEDEGSDDVHVNLDSTDSEHTAIHYIMGDV
THPQAAREDAIIVHCVDDSGRWGRGGLFMALEIRSDQPRRQYELAGKMKDLELGNVLMFP
IDDKESRHDGQDLLALIVTQKRDRSNNVSGIKLLALEEGLKKICTVAKKKKASVHLPRIG
HATKGFNWYGTERLIRKYFASRNIPTYIYYYSKKVSSSVSQPTTSSRKLGSSDDRQPGHV
SQHLAEFMSGVNVYFYNLLPSERKNLARYLIAYDGSEDTVLGSETTHVVAEVENAVHMQD
LQTILQGNPHVAVVQKKWLEACFSKQEKVSTAQYQIDFN
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagtttctgcaaaatgtcaaacaaaaaattaaaccgaaacagcctaaagggggc
atacaggagcaggacctggggacatgggggctgacagggataaagctgagatcctaccaa
cttgatggcttaaactggctggtccagtgctttaacaaccagcatggctgcatcctggga
gatgagatgggtcttgggaagacttgccaaacaatatctcttcttgtgtatgctgtgggc
agtttgaatgaaaaagggccttttcttatcctgagtccactttctgtgataagcaactgg
aaagaagaactggaaaggtttgctcccaaactttcagttgttgtctgtacaggggacaaa
gaggaaagggccgagctgcacagagatctgaagaaccggtcagatttccatatcctgctg
actacatatgagatctgcatcagagatgcctgttttctgaagagatttgattggagggta
ttggttgtggatgaggcccacaggttgaagaatcagaattccttgctgcacaagatgctg
tctgagttttcagtggggttcactttgcttctgactggaacacccgttcagaacagtctc
caggagctcttctccctgctgagcttcatcgagccccaggtcttccctgagcatgaggca
gagggtttcgtcactagctacaaagatgtggagacacagaaagagcgagctgcagagctg
cacagcctcctgcagccgttcctgctgcgcagagtgaaaacggacgtggcggcagagctg
cccaagaagagcgagctggtggtgtatcacggcatgtcagccctgcagaagaagtactac
aaggctgtccttaccaaagacctggatgcatttgataatgaacggggctccaaagccaga
ctatcaaacattttaattcagctccggaagtgtgttgaccatccatatttatttgatggt
gttgaaccggaaccttttgaaatcggagatcatctcattgaagccagtgggaagctccat
ctcctggataccatgctcagcttcctgaatgacaggggccatcgtgtattgctgttttct
cagatgacacgaatgctggatatcttgcaggattacatggaatacagaggctacagctat
gaacggcttgatggatctgtgaggggcgaagaaagacatcttgcaatcaagaatttcagt
tccaaagatgtttttgtgtttctcttgagcacaaaagcaggtggagttggcatgaacctg
actgctgctgacacagtgatttttgtggacagtgatttcaatccccagaatgacctacag
gctgctgctcgagcccaccggattggccagaaaaggcctgtgaaaattatccgtctgatt
gggagagatacgatagaggagattgtctacagacgtgccatgtccaagctgaagttaaca
aatactgtgatcgaaggaggacagttttctcaccgagacgaaggggattcctccatggct
gcagacatgcagttgagtgaaatcttaaaatttggagtggataagctcctttcttcagag
gaaagcaccatccgagacgtggacctggggaagatcctggggaagaccaggaatggcgag
tgggtgacagaagaccctccgctccccacagaggatgagagctcagaatcggaagagact
gaaacccatatgtatttatacgaaggcaaagattactccaaagagcccagtgcagaggac
aagaaaacatttgagcatctgctggatttggaaaacgtagttcttgctgatgctggaaga
aaaggacgagcacttcgaaataaatctgatgttctattgtccggtctccctgacgtgaca
accagcaggaagagagtgctgaccccagaggagctccatcagaggcgccaaaaaagacag
gtggcagcggccaagcgggcaaaactgatggaggacaagaaaaaacagcagaaggaggca
gagcacaagaaaaagctggcgtggtgggaatcgtgcgggtaccgctccctgtgtgtctcc
tcagaggacagtgaagaggaggaagggggctcggaggatgaggggagcgatgatgtccat
gtgaacctggactccactgactcagagcacacagccatacactacatcatgggggacgtc
actcacccccaggctgcccgggaggacgccatcatagtgcactgcgtagatgactctggt
cgctgggggagaggaggattgttcatggctctggagatccgatccgaccagcccaggaga
cagtatgagctggctggaaagatgaaagacttggaacttggaaatgtgctgatgtttcca
atcgatgacaaagagtccagacatgatgggcaagacctgttggccttgatagtgactcag
aagagagatcgatcaaacaatgtatctggcatcaagctcttggcattggaagaggggctg
aaaaagatttgtactgtggccaagaaaaagaaagctagtgtccacctccctcgaatagga
catgcaacgaaaggttttaactggtacgggacagaaagactcatccggaagtactttgct
tccaggaatatcccaacttacatatattactattccaagaaggtttcttcatctgtttct
cagcccaccacgtcttccaggaagctggggagcagcgatgaccggcagccaggccacgtg
tcacagcatctggctgaattcatgtctggggtcaatgtgtatttctataacctactcccc
tcggaaagaaagaatctggcccgctacctgattgcatatgatggcagtgaagacacagtc
ttgggttcagaaactacccatgttgttgcagaggtggagaacgcagtccatatgcaggat
ctgcagaccattcttcaagggaacccccacgttgcagttgtccaaaaaaagtggttagaa
gcctgcttctccaaacaagagaaagttagcacagctcagtatcaaattgatttcaattga
DBGET
integrated database retrieval system
