Polyodon spathula (Mississippi paddlefish): 121320547
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Entry
121320547 CDS
T07273
Name
(RefSeq) zinc finger CCCH domain-containing protein 13-like isoform X1
KO
K22909
zinc finger CCCH domain-containing protein 13
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121320547
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
121320547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_4
zf-CCCH_9
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
121320547
NCBI-ProteinID:
XP_041114891
LinkDB
All DBs
Position
9:complement(25024615..25045484)
Genome browser
AA seq
1709 aa
AA seq
DB search
MSKIRRKVTVENSKTISDSTSRRPSVFERLGPSTGSNAETQCRNWQKTGNCVYGNTCRYT
HGPQPRGKGYSGSYKRSPERPTGDLRERMKNKRQDAEPDAQKRNPDEPTSPVARRDSSRS
RHREKEDIKITKERTPESEDEPTEWEANREDSDNGDYDYELSLEMKRQKIQRELMKLEQE
NMEKREEIVINKEEHISKSRSSNYSKMSPEPVKSKGSPSSRKSSGSPKHKASPKASSGKK
EKKVAGLSSPGTDQQRSSKAVQGKKKGPRTPSPPPPPPLPPPPPPSVQEQSPVAKKHKEK
HKAKERMEDKSKETKERGRDSEKQRSKERKEKRRDHSENSQKQKISQSPEDRSGSNSSPS
REFSPSRRKSSSPSLTRSATQKTAFSPSRRSPTPPRHRSPTPTRHHSSSSHSGSSAQRHS
PSPRRKRSVSPYQREAVSPRRSCSPYLARPSSPQRRASPNRTHSQGRDKGRQERDRSPPS
HDRRHDRREEGRGKREKETREERDYEPEQGTSREPRDDRESREVRERREARDRRDTRETR
ETRDTRETRDARETRDYRDSKDTRDPRAETRSTRDLHDYRERDRERERERDRGEAHRKDE
PFQEDRSYGRGHTREDSNRSDTRNETRSEARNETRNDSRNEPRNERAGRGRARGPEPPEK
GSRGTRGSQFDSNTSNYHENWESRSSYSERVPERDRYEGDRREQARDSSFDRRGGHAERD
RRENRDRDQRPASPTRHQSRNDDIERDERRDERRPDRVDDRRDERTRDRDREREREREKE
REKEKEKERDREKERELERDRVRDRERDREREREKEREKEREREREREREREREERERER
TREREREQRERERQREQREWEDREKGREERRDRRDDQKEERTLRDPHEERKASRKRHRVE
SSPSPHPSPKRIRDASPDSEGCNSTEEKNEKHRLLSQVVRPKESSRSPARVVAEEKPSRW
KEEDKKVEKKERTKHDEPEHRDRAATRQRDHLSDGTAVGSRRSKEPPPPPESVSQPPAED
QVATDRTHDDGKKKTKSQKKGLKKNRKDDDGSSLAERYNPEPSAAEESVVVLSPRKVPKK
KAVEKKRKRSRGGESDISEEEAVAAAQPPSKKKRGPRTPPLVVQSAVKEKFPAQVAEKSS
TDEAMQPTKGEGANFSDWSDEDVPERAEIAAPEKKPSVETPKKGQKSKGRDRVEPPAAAA
ATAAATALVVAEELPLQLPPAQPPAPQHHRKASDQKRSSSLGSNQSRTSSSRLRSPSNES
HPSGDDQGARRRRLQGRSRDRECERERIPAVEPTVERKSRIDQLKRGEPSRSTSSDRQDS
QSHSSRRSSPESERQARSRAGSYDSRERLPEREREREREQEQLSRERERKDGRQRDWDRE
PETRDWSRGREANRNREQRDRDRELRRRDIDPDRERHIPEGHDRDISLHGEVKRLEPKQE
KDFEPLLCEAVPVEAERTEKTLDSLHELEEANEAEKPHSLAGDDDGKADDVQSLGSGGEE
YEPISDDELDEILAEGAEKREDQQDDDKMLDPMHAIDVDWSSLMPKKHIEAREPGAALLK
FTPGAVLLRTGISKRLAGPQLFSRVKEACRGELEDPSDAEKLFEHELGALNMAALKRKEE
RAGLLRNLGPCCKALCSRRDIAIRKQLLKNEKGTTKQMYTNPPVVDNELLQLSLRLFKRK
TAFQVPNQEKTESSSTLSQPTVQSEVCVS
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaatcaggaggaaggtaaccgtggaaaattcaaagaccatatcggacagtacc
tcccgcagacccagtgtgtttgagagacttgggccaagtacaggaagcaatgccgagaca
cagtgtcgaaattggcaaaagactggcaattgtgtttatggaaatacctgtcggtacacg
catggaccccagccaagagggaaaggctatagtggttcatacaaaaggtcaccagaaaga
cctacgggagatcttcgagagaggatgaagaataaaagacaagacgctgaaccagatgct
caaaagagaaatccagacgagcccacttctcctgttgctagaagagactcgtcacgtagc
agacacagagaaaaggaagatattaaaataacaaaagagcgtactccggaaagtgaggat
gaacccacagagtgggaagccaatagagaagactctgacaacggtgattatgattatgaa
ttgtccctggaaatgaagagacagaagattcaacgggagctgatgaagctagagcaggag
aatatggaaaagagagaggagattgtcataaataaggaggaacacatcagcaagagcagg
agtagcaactattcaaagatgtctcctgagccagtcaaatccaaaggatctccttcatcc
cgaaaatccagtggctcccctaaacacaaagcaagccccaaggcttcttcaggcaagaaa
gaaaaaaaggtggctgggctatcttcacctggcacagaccagcagaggtcttctaaggct
gtccagggtaaaaagaaaggccctcgtaccccaagtcctcctcctcctcctcctcttcct
cctcctcctcccccctctgtccaggagcaaagccctgtagccaagaaacacaaagaaaaa
cacaaagctaaagaaagaatggaagacaaatcaaaggagaccaaagaaaggggcagggat
tcggagaagcaaagaagcaaagaaaggaaggagaagcgcagggatcattcggagaactcc
cagaaacaaaaaatatcccagtcgccggaggaccggtctggcagtaactcttctccttct
agggaattctctccttcaagaaggaaatcatcgtcaccatcactaacaagatctgccaca
cagaaaacagccttctcaccatctcgcagatcacccacccctccaagacatcgcagccca
acacccactaggcaccactcctcttcatcccactctggctcctcagctcaaaggcattct
ccctctccccgacgtaagcgctcagtttcgccctaccagcgggaggcagtttcccccagg
cgctcctgctccccatacctggcccggccatcttccccacaacgcagggctagccctaac
cggacccactcccagggcagagacaagggaagacaggagagggatcggagccctccttca
cacgaccgacgacatgaccggagggaagaaggtcgaggtaaacgagagaaggagacccgt
gaggagcgggattatgaaccggagcagggcacctcccgtgagccaagggatgatcgagag
tcaagagaggtgcgagagcggagggaggcccgggatcgcagggacacacgagaaactaga
gagacgcgggacacacgggaaactcgtgatgccagggagacccgagattacagggacagc
aaagacactcgggatccgagagcagagacacgctccacccgcgacttgcacgattacagg
gagagagatcgcgaacgggagagagagagggaccgaggggaagcccacaggaaggatgaa
cccttccaagaggacaggagctacgggcgtggccacaccagggaggatagtaatcgttcg
gacaccaggaatgagacccgcagtgaggccagaaatgagacccggaacgactccaggaat
gaacctcgcaatgagagagctgggagaggaagggccagagggcctgaaccaccagaaaag
gggagccgtgggacaagagggagtcagtttgacagcaacaccagcaactaccatgaaaac
tgggaatccaggagcagctattccgagagagtgcctgagagggatcgatacgagggcgat
cggagagagcaagccagagactcttcctttgacagaagaggaggccatgcagagcgggac
cgcagagagaacagagacagagatcagagacctgcctctccaacaagacaccagagtcgg
aatgatgacattgagcgggacgagagaagagatgaacggagaccagacagagtagatgac
aggagggatgagagaaccagggatcgtgatcgggagagggaacgggagagggagaaggag
cgagagaaagagaaagagaaagagcgagatagggagaaggagagagagctggagcgcgac
cgagtaagggacagggaaagagatagagaaagagagagggagaaggagcgagagaaggaa
agggagcgggagagagagcgagagcgagaaagggagagggaagagagggagcgggaaagg
accagggagagggaacgtgagcagcgagagagggaaaggcagcgagaacagagagagtgg
gaggacagagagaagggccgtgaggagcgcagggaccggagggacgaccagaaagaggag
cgcaccctaagagacccacatgaagaaaggaaagccagcaggaagcggcaccgtgtagaa
agcagccccagccctcatccctctccaaagagaatccgtgatgcctctcctgacagtgaa
ggctgcaacagtacagaggagaaaaatgagaagcacaggttgctgagtcaggttgtgcgt
ccgaaagaatcttcccgctccccggcacgtgttgtagcagaggagaaaccaagccggtgg
aaagaagaggacaagaaggtggaaaagaaggagagaacgaaacatgatgagccagagcac
cgggacagggcagctaccaggcagagagaccatctctcagatggcactgctgtggggtcc
agaaggagcaaggagccaccaccccctccagaatcagttagccaaccaccagcagaggat
caggtggccacagacaggacccacgatgacggcaagaagaagaccaagtctcagaagaag
ggtttgaagaagaaccggaaggacgacgatggcagcagcttggctgagaggtacaaccca
gagccgtcggctgctgaggaatctgtagtcgtgctgtcccccaggaaggtgccgaaaaag
aaggcagtagaaaagaaacgcaaacggtcccgtggaggggagtcggacatctcggaggag
gaggccgtcgccgctgcccagccaccaagcaaaaagaaacgagggcccaggaccccacct
ctggttgtccagtcagctgtcaaggagaagttcccagcgcaggttgcagagaagagcagt
actgatgaagcaatgcagcccaccaaaggagaaggggccaactttagcgactggtctgat
gaggatgtccctgaacgtgctgagattgcagcacctgagaagaagccctctgtggagacg
cccaagaagggtcaaaagagcaaaggaagggacagggttgagccgcctgccgcagccgca
gccactgcagcagccactgctttggtagtagccgaagagctcccactgcagctgccccca
gcgcagcctccagcaccacagcaccaccgcaaagcatcagaccagaagcgcagcagcagt
ctgggcagtaaccagagccgtacttcctccagtcggctcaggtctccctcaaatgaatca
caccccagtggggatgaccagggtgccagaagaaggcgtctccaggggcgctctcgagac
agggaatgtgagagggagaggatcccagctgtggagcccactgtagagaggaagtcccgt
atagatcaactcaagcgaggggagcccagccgaagcacatcttcagatcgtcaagactct
caaagccacagttctcgaagaagctccccagagtcggagaggcaggcacgttcccgagcg
ggatcctatgacagcagggagaggctgccggagagggagcgagaaagggagcgggagcag
gaacaactctctagagagagggagcgcaaggacgggaggcagcgggactgggacagggag
cctgagaccagggactggtctcgaggacgggaggcaaataggaacagggagcagagagat
agggacagagagctacgcagaagggacatagaccctgatcgggagagacacattccagag
ggacatgatcgtgacatttctttacatggggaggtgaagaggttagagcctaagcaggag
aaagattttgaaccactactgtgtgaagctgtacccgttgaggcagaaagaacagaaaag
acactagacagtctacatgagctggaggaagcaaatgaagcggagaagcctcatagtttg
gcaggggacgatgatggtaaagcagacgatgtccagtcccttggatcaggtggagaggag
tatgagcccatcagtgatgatgagctggatgaaatcctggctgaaggggcagaaaaaagg
gaggatcagcaggatgatgacaagatgctggaccctatgcatgcaatcgatgtggactgg
tctagcctgatgcccaagaagcacatagaagctcgagagcccggggcagccctgctgaag
ttcacacctggagcagtcctgttgagaactggcatttccaagaggcttgcaggccctcag
ctcttctccagggtgaaggaagcctgtcgtggagaactggaagacccaagtgatgcagag
aagttgtttgagcatgagttgggtgccctcaacatggcagcactgaagaggaaagaggag
agagctggtctgctaaggaacctgggcccctgttgcaaagctctgtgttccaggagggac
attgcaatccgcaaacagctgctaaagaatgaaaagggaacaacaaagcagatgtacaca
aaccccccggtggtggacaatgagttactccagttgagtcttcgtttgttcaagaggaag
acggcattccaagtgccaaaccaggaaaagactgagagcagcagcaccctttctcagcca
actgtacaatctgaagtctgtgtctcctag
DBGET
integrated database retrieval system
