Polyodon spathula (Mississippi paddlefish): 121320598
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Entry
121320598 CDS
T07273
Name
(RefSeq) putative ATP-dependent RNA helicase an3 isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121320598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121320598
03041 Spliceosome [BR:
pspa03041
]
121320598
03036 Chromosome and associated proteins [BR:
pspa03036
]
121320598
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121320598
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121320598
mRNA cycle factors
Common to processing body (P body) and stress granule
121320598
Spliceosome [BR:
pspa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121320598
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
121320598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF4318
Utp25_C
Motif
Other DBs
NCBI-GeneID:
121320598
NCBI-ProteinID:
XP_041114993
LinkDB
All DBs
Position
9:complement(28159716..28181543)
Genome browser
AA seq
722 aa
AA seq
DB search
MSHVAVENALSLDQQLAGLDLNSADGQGGGVSGRRYIPPHLRNKEASKNDSPGWDNGQGS
NGFVNGYHDDRDSRMNGGNSFGGRGGDRGGRGGYRGNRGGSFNQCQPIQNTGFAYDKDNS
GWNKDQRDPYTSFGGRNDRGKSSFYSDRGTGSRGRYDRGGFSSRDGGGNSRWVEDNSRDE
DWSKPLSPNERVEHELFSGGNTGINFEKYDDIPVEATGSNCPPHIESFQDVDMGEIIMGN
INLTSYTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTEGPGEALQAA
KANPLENGKYGRRKQYPISLILAPTRELALQIYDEARKFAYRSKVRPCVVYGGADIGQQI
RDLERGCHLLVATPGRLVDMMERGKIGLEYCKYLVLDEADRMLDMGFEPQIRRIVEQDVM
PPKGIRHTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEEGDKRSF
LLDLLNATVIPSEVQENASEISDKTGKDSLTLVFVETKKGADALEDFLYREGYACTSIHG
DRSQRDREEALLQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG
RVGNLGLATSFFNEKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHKSTGRGRSKRFSG
GFGARDYRQTSNTANSFGSRGSRPGGGHGGNRGFGGGGGFGNFYSSDGYGGNYNSQVDWW
GN
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgagaatgcactcagtctagatcagcagcttgctggcctagac
ttgaactctgctgacggacagggaggtggcgtgtcaggcagacgttacattccaccccat
ttaaggaacaaagaggcttctaagaatgattctcctggctgggacaatggtcaaggaagc
aatggctttgtgaatggatatcatgatgatagggattctcggatgaatggtggcaacagc
tttggaggaagaggaggtgacagaggtgggcgtggaggttatcgtggcaacagaggtggc
tcctttaaccagtgccaaccaattcagaatacaggctttgcatatgataaagataactct
ggatggaacaaagaccagagggacccctacactagctttggagggcgtaacgatagagga
aagtcctctttctatagtgaccgtggaactgggtcaagaggaaggtatgaccgtggagga
tttagctcccgggacggtggcggaaacagccgatgggttgaggacaattcccgtgatgaa
gattggtcaaaacccctgtcgcctaatgaacgtgtggaacatgagcttttctctggaggc
aacacaggaattaactttgaaaagtacgatgacattcccgttgaggccactggctcaaat
tgccctccacatattgaaagtttccaagatgtggatatgggagaaatcattatgggtaac
ataaatttgaccagttacactcgacctactccagtgcagaaatatgctattccaataatc
aaatcaaagagggacttgatggcttgtgctcagacaggctctgggaaaactgcagcattt
ttacttccagtcctcagccaaatctacactgaaggtccaggagaggctttacaagcggca
aaagccaaccctctggaaaatggaaaatatggacgccgtaaacagtatccaatctctttg
attctggccccaacccgagaactggcgctccagatctatgatgaagcaagaaagtttgct
taccgttccaaagtgcgtccttgtgtagtatatggtggggctgacattggacagcaaatt
cgtgacctggaaagaggctgtcatctcctggtagctactcctggtcgtcttgtagacatg
atggagagggggaagattggtctggaatattgcaaatatctggtgctggatgaagcagac
agaatgcttgacatgggttttgaacctcagattcgtcgcattgttgaacaagacgtcatg
cctccaaaaggaatccgtcacaccatgatgttcagtgctactttccctaaagaaatccag
atccttgctcgtgactttctggaagagtacattttcttggctgtgggccgtgttgggtca
acctctgagaacatcacacagaaagttgtttgggtagaagagggagataagcgttccttc
ctgcttgatctgctgaatgctacagtaattccgagtgaggttcaggaaaacgcaagtgaa
atctccgacaaaactggcaaggactccttgacgctggtatttgtggaaacaaagaaaggt
gcagatgcccttgaggacttcttgtaccgtgaaggctatgcttgcaccagtatccatggg
gaccgttcacagagagacagagaggaagcccttctccagttccgttcaggaaggtgccca
attttggtggctacagctgtggcggctcgtggcttggacatttctaatgtgaaacatgtc
attaactttgatcttccgagtgacattgaagaatatgtccatcgcattggccgtactggc
cgtgtaggaaatcttggtctggcaacctcatttttcaatgagaagaacagtaacattacg
aaggacctccttgatattctagttgaagccaaacaggaggttccttcctggctggagagc
ctggcttacgagcaccagcacaagagtaccggacgtgggcgttccaagaggttttctggt
ggatttggcgcaagagattatcgtcagaccagcaatactgccaacagctttggcagccgt
ggaagccgccctgggggaggtcatggtggaaacagaggatttggtggtggtggtggcttt
ggaaacttttacagcagcgatggttatggaggaaactacaactcccaggttgactggtgg
ggaaactga
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