Polyodon spathula (Mississippi paddlefish): 121320608
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Entry
121320608 CDS
T07273
Name
(RefSeq) protein Atg16l2-like isoform X1
KO
K20868
autophagy-related protein 16-2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121320608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121320608
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121320608
Membrane trafficking [BR:
pspa04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
121320608
Others
Specific organelles associated proteins
Auto phagosome
121320608
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
121320608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF12
Beta-prop_NWD2_C
Occludin_ELL
Beta-prop_IFT122_1st
eIF2A
Motif
Other DBs
NCBI-GeneID:
121320608
NCBI-ProteinID:
XP_041115016
LinkDB
All DBs
Position
9:6307848..6319330
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AA seq
489 aa
AA seq
DB search
MAATDSSGRSSSPVKVGFNLNKTSDKWKRHIVLQLRHRDKTQKFMFQDVINSYIKLLDRS
NQKAQFTQGFQKEALGLGDSRQPPRTISCDSKELMLARHQDIVTELRKTGGELAYQIVEL
NQKAKLKDTVLEEQHISLSELRRRLGEVEDEWRSLQSRMQVVEGGNQALKQAYDTLLQQH
QEMDDKYRQEKIQGSELLEDLIRVKELAAENMNHKNERRARAKEASLRKELATAAKKAVN
IDIGFEKAEPTDSGVQVGAFQGEERHERRQTRPFRSASVASPKIFDSIKELFDSKIKKRG
HSVSSLSDDVFVPMAICVSARIPTKPLHVLEAHELGINAVKFSPTSKLLATGGTDCIIKL
WDLIGGKLHSAGTLEGSNEGITSIEFDPTGTKVLAASYDKSALFWKLDDCAPKFTLTGHS
RKVTSAKFKSSLRQAVTGSADRTVKIWDLQRAACVKTINVFSFCSDVVCSEYFIVSGHFD
KKIRFWDSR
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgactgacagctcagggcggtcttcaagtcctgtcaaagtcggctttaactta
aacaaaacgtcggataaatggaaacgtcacatagtcctgcagctcagacatcgggacaag
actcagaagtttatgttccaggatgttataaactcgtatatcaaactgctagacagatcc
aaccagaaagctcagtttacacaaggctttcaaaaagaggcgctaggcctaggtgacagc
aggcagccaccaagaaccatatcatgcgactccaaagagctaatgcttgccagacatcag
gatatagtgacagagcttcggaagactgggggagagttagcttaccagattgtggaactg
aatcagaaggctaaactcaaagacactgtactggaggagcaacatatcagtttgtctgag
ctgaggaggcggctgggagaggtggaggatgagtggaggagcctgcaaagccgtatgcag
gtggtggagggagggaaccaggctttgaaacaggcgtatgataccctgctgcagcagcac
caggagatggatgataagtataggcaggaaaaaatacaaggctccgagctgctggaggat
cttattcgagtgaaggagctggctgctgagaacatgaaccacaagaacgaacggagggcg
cgcgcaaaagaggccagtctaagaaaagaacttgccacggctgcaaaaaaggcagtaaat
attgacattggttttgaaaaagcagagccaactgactcaggggttcaggtgggagcgttt
cagggagaagagagacatgagaggcgacagacaagaccctttagatctgcctcggttgct
tcacctaagatttttgattccattaaggaattatttgattccaaaataaagaagagaggg
cactctgtgagcagtctgagtgatgatgtctttgtgcccatggcgatctgtgtttcagcg
aggatacctacgaaaccactgcatgtcctggaagcacatgaattagggatcaatgctgtg
aagtttagtccaacctctaagctgttggctacaggaggcacagactgcatcatcaagctg
tgggacctgattggaggaaagctgcacagcgcaggaacactggagggcagtaatgaaggg
ataacaagcatagagtttgacccgactgggaccaaagttttagctgcctcatatgacaag
tcggctctgttttggaaactggatgactgtgcacctaaattcacattgactggtcattct
cgtaaagtgacatcagccaaatttaaatcaagtcttcgtcaggctgtgactggcagtgcg
gatcgaacagtgaagatctgggatctacaaagggctgcctgcgtgaagaccatcaatgtt
ttctccttctgcagtgatgtcgtctgctcagagtactttattgtgagtgggcactttgac
aagaagatacggttctgggacagcaggtaa
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