Polyodon spathula (Mississippi paddlefish): 121320636
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Entry
121320636 CDS
T07273
Name
(RefSeq) histone-binding protein RBBP7 isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082
ATP-dependent chromatin remodeling
pspa03083
Polycomb repressive complex
pspa04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121320636
03083 Polycomb repressive complex
121320636
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
121320636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121320636
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
121320636
Histone modification proteins
HAT complexes
HATB complex
121320636
HDAC complexes
Sin3A-HDAC complex
121320636
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
121320636
PRC2.2
121320636
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
121320636
Heterochromatin formation proteins
Other heterochromatin formation proteins
121320636
Chromatin remodeling factors
NuRD complex
121320636
NuRF complex
121320636
NuRF complex (fruit fly)
121320636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WD_LRWD1
Beta-prop_WDR90_POC16_2nd
eIF2A
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_DCAF12
ANAPC4_WD40
Beta-prop_RIG_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
121320636
NCBI-ProteinID:
XP_041115081
LinkDB
All DBs
Position
9:29979760..29989592
Genome browser
AA seq
427 aa
AA seq
DB search
MAEKEVYDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTRPEGKDY
AVHRLVLGTHTSDEQNHLVIASVQIPNDDAQFDASHYDSEKGAEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECSPDLRLRGHQKEG
YGLSWNPNLSGNLLSASDDHTICLWDIGAGPKEGKIVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDA
EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEEPDTPAS
ELEGQGS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaaagaagtttatgacgatgctgtggaagaacgagttatcaatgaagaatac
aagatctggaagaagaacacccctttcctttatgacttggtgatgacacatgcactggaa
tggccaagtctcacagtacagtggcttccagatgtgaccagaccagagggaaaggactat
gctgttcacaggctggtgctgggcactcacacctcggacgaacagaaccatctggtaatt
gccagcgttcagatccccaacgatgatgcccagtttgacgcttcccactacgacagtgaa
aaaggagcagaatttggaggatttggatcagtgagtggaaaaatagaaattgaaattaaa
atcaaccatgagggagaagtgaatcgtgcaagatacatgccacaaaacccttgtattatt
gcaacaaagacgccaacttcagatgtgcttgtctttgactacactaaacacccctccaaa
ccagaccccagtggagagtgtagtccagatcttcggttgcgaggccaccagaaagaaggc
tatgggctttcttggaatccaaatctcagcggaaatcttctcagtgcttctgatgatcat
acaatatgcctgtgggatataggtgcaggaccaaaagagggtaaaatcgtggatgccaag
accatcttcactggccatactgctgtagtggaggacgtctcttggcacctgcttcatgaa
tccttgtttggttccgttgctgatgatcagaaactcatgatctgggacaccaggtcgaac
aacacgtctaagcccagtcactctgtggatgcccacacagctgaggtcaactgtttgtcc
ttcaacccctacagcgagtttatactagcaaccggatcagccgataagacggtggctctt
tgggatcttagaaacctcaaactgaaacttcattcctttgaatctcacaaggatgaaatt
ttccagcaggtacaatggtcgcctcataacgaaaccattctggcttcaagtggcaccgat
agaagactcaatgtgtgggacttgagtaaaattggagaggaacagtcagctgaggatgca
gaagatggccctcccgagctcctgtttattcacggaggacacactgccaagatatcggac
ttctcctggaaccccaatgaaccctgggtaatctgctctgtatcagaggataacatcatg
caagtgtggcagatggctgagaatatttataatgatgaagagccagacactccagcttct
gaactggaaggacaaggatcttaa
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