Polyodon spathula (Mississippi paddlefish): 121320805
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Entry
121320805 CDS
T07273
Name
(RefSeq) tumor necrosis factor ligand superfamily member 13B-like
KO
K05476
tumor necrosis factor ligand superfamily member 13B
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04060
Cytokine-cytokine receptor interaction
pspa04672
Intestinal immune network for IgA production
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
121320805
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
121320805
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
pspa04052
]
121320805
04090 CD molecules [BR:
pspa04090
]
121320805
Cytokines and neuropeptides [BR:
pspa04052
]
Cytokines
Tumor necrosis fators
121320805
CD molecules [BR:
pspa04090
]
Proteins
121320805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNF
Fur_reg_FbpA
Motif
Other DBs
NCBI-GeneID:
121320805
NCBI-ProteinID:
XP_041115387
LinkDB
All DBs
Position
9:38389090..38398003
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AA seq
269 aa
AA seq
DB search
MKSTEQNLNIYFDPQQKYLISTILFLTLAAIMSTSLSAVSLYHVITLKAEVATLKTEIFK
KRDEHLVSLTYPDGEMPEPNRDQEQRVQHVNEEDILEDLRTVNSISKPGNPRIRLRRSNN
LTDKTVLQPCLQMIANKDKGTFQKGENTAIPWLPGLKRGTALEEQTNAIIVKETGYFFVY
SQVYYKDKIYAMGHIIVRKKASIVGDELQNVNLFRCIQNMSDDFPFNTCYTAGIAKLEEG
DSIELLIPRQSAVVSLDGDSTFFGAIKLV
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctactgaacaaaacctcaacatttactttgatccccaacagaagtacctaatc
tccacgatattgtttctgacacttgcagcaataatgtctacttctctgtcagctgtctct
ttgtatcacgtaataacattaaaagcagaagtagccacgttgaagacagagattttcaaa
aagcgagacgagcacttggtatcattgacctaccctgatggagaaatgcccgaaccaaac
agggaccaagagcagagagtgcagcatgtaaatgaagaggatatactggaagacctcagg
acagtaaactctatatcaaagccgggtaatcccagaataaggttgcgcaggtcaaataat
ctcactgataaaacagtacttcagccgtgtttgcaaatgatcgcaaacaaagataaaggc
accttccaaaaaggtgaaaatacagctatcccttggcttccaggtctcaaaagaggcact
gctctggaagagcaaaccaatgcaataattgttaaagaaaccgggtacttttttgtgtac
agccaggtttattataaggataaaatctatgcaatggggcacataatagtaaggaaaaag
gccagcatagttggagatgaactgcaaaatgtcaatttattcagatgtatccaaaatatg
agcgatgattttcctttcaatacctgctatacagctgggattgcaaaactagaagaagga
gatagtattgaactcctcatacctcgacagtcagcagtggtatctctggatggggattca
acattcttcggcgctataaagcttgtatga
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