Polyodon spathula (Mississippi paddlefish): 121320810
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Entry
121320810 CDS
T07273
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04382
Cornified envelope formation
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121320810
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121320810
09142 Cell motility
04820 Cytoskeleton in muscle cells
121320810
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121320810
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121320810
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121320810
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121320810
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121320810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121320810
NCBI-ProteinID:
XP_041115396
LinkDB
All DBs
Position
9:complement(38684210..38754796)
Genome browser
AA seq
1653 aa
AA seq
DB search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NT seq
4962 nt
NT seq
+upstream
nt +downstream
nt
atgctatttctaaatggtgcttggctgctagttatagcggtcgtcgcaagtggcataaat
aaaacggaagctgcggggtgcagtggttgtggaaaatgtgactgcagtggagtgaaagga
caaaagggtgagactggctttccagggttgcaaggtccaatgggattccctggaatgcaa
ggccctgaggggccacatggaccaatgggccccagcggtgacattggagccccgggactc
tctgggatgaaaggaatcagaggccctgcaggaatacctggatttccaggaaccccgggc
ataccaggtatcccaggtcaagatggtcctccgggttcaccaggaatcccaggatgcaac
ggtacaaagggtgacaggggcttcgatggcaaacccggaatgccaggattatcaggcagt
ccaggtacccctgggctaggaggacagaagggggagcccggtgaaatagacggcattttt
caacacaaaggtgaaaaaggaaatccaggctacccaggtaatcagggtccacccggacca
ccaggacgtatgggtccaattggcccacctggactgcaaggacccaagggctctgatggt
ttacctggcctcaaaggtgagaagggtgacaaattgactttccaaggccaaaagggagag
aaaggcgaaccaggcccaagaggctctcctggtatatcctcagaggtttccgggcctaca
caagtaactgttataccaggaagcaagggtgaccggggtgaggtcggtcccaaaggtgaa
ccaggtatttgccttggaggcgtgaagggtgaacctggaaaacctggccctagaggtaaa
ccagggaaagatggagagcatggagtaccaggaagcactggaactccaggtgctccaggt
atcccaggcttaacaggacaggacggtgagaagggggagaaaggtgaaactgggcttcaa
ggtcctccgggaactgtggtcacaagcactggtgaagttattgcatatggggaaaagggt
gaatctggaccaccaggttttacagggccagaggggaaaaaaggagagcgaggttttcct
ggtgtgcaaggaccccctggacccccaggtctaagtctcccgggaccccctggtccagct
gggttcccaggggagtctggtcagaagggagaccaaggaaatcctggattgtctcggtct
ggagaaaaggggcaagatggagcacaaggaccgcccggaccaccaggcccacctggatcc
ttggatgaaggatgtacggatccagaatgcccccctggtccacctggatttcaaggagag
atgggtcaaaaaggtgacaaaggagatacctgcttccactgtgagtcgtttggtccgcct
ggacttcctggcccacaaggaccagcagggcagcaaggctatccaggggcaactggtact
aagggtgaaaaaggttctcaaggaagtcctggtcttgaaggtgcacctggtgttcctggt
acttctggcttgtatggctcccctggtgcaaaaggggagccaggagatgttatctttgga
ccaaatctaaaaggagacaagggtcaggcggggatccctggtcctactgggactccaggt
tttgatggggcaccaggaagggatggtctacctggggactcaggcccaaaaggcgagcca
gccaccattggtttcaaaggggatcgtggtccaactggagaccctggcttccctggaact
caaggagaaaggggtcccccagggcccccagggtttggtgctcctggtttacctggagag
aaaggaaaccagggagtcccagggcattcggggttgcctggctcgcccggaattaagggt
gaacctggcaaaagcatgattgaaattggaccacaaggcccacctggaacccctggaata
ccagggcagccaggctccccaggtgatatgggccctcagggaatccctggcgttcctgga
tttcaaggagcaaaaggggaccagggtcagccaggagtgggctttccagggccacctgga
accaaaggacacccggggttgccagggccagtggggcagcctggcgccccggggctcgac
gggaaagaaggtgaatcgggacgccctggcccacctgggcagaagggtgaatctgggatt
ggtcttcccgggcccaaaggatctccaggccctcaaggtgttgatggattcccgggagag
aaaggaaacccagggcttcctggcattcctggagctgaaggtcacaccggcccgcctggg
cctccaggcttaaaaggtaaccaggggcctccaggtttacaaggtgtcaggggcccccct
ggtgaaccaggagctggtgaacctggcccacctgggtcccagggcccaccaggtccaccc
ggccctctaggatcacaggggttaaagggtgaaaagggctacccaggcttccctggactg
gacatgccagggccccaaggagagaaaggcattcagggtcccactggctttccaggaata
gttgggtctccaggacaacctggcccagcagggagagaaggacattcagggcctccaggt
cctaaaggagaactgggagtgatgggcacaccgggtatatctgggagccctggtgtccaa
ggtaacccaggtttgcctggctcaagaggtgacccaggttccagtggcctgcctggacat
cagggtgaaacaggagctaaaggagaagcaggggaccaagggataccgggccctccaggg
accatgagcaaggaagaaatacagcagatgagaggaccgaagggagataaaggattcaca
ggtgttccaggaaaagccggagtgaaagggtatcaaggaaccccaggtagcccaggaatg
ccaggaaaggatggagagccaggattgcctgggcaaccaggacttaaaggtgacccaggt
tctactggactccctggtcgtgagggtttaccaggacagaaaggatccattggtcaaatg
ggcttaccgggttcacaaggaacaaaaggtactaaaggtgtgccgggttcacctggcttg
acggggtaccctggaacacttggtgaaaagggtcaaaggggcgaccctggagaaccaggt
atcggaaagccaggagctaaaggtgaaaagggtcagccaggcccaccaggtttccctggt
atcccaggtgataaaggtgtgaagggagtagaaggtatgccgggaatgcctggtgtacca
ggtcctaaaggagacattggatcaccagggtatccaggtagtccaggatttccgggacag
aaaggaattgatggattatctggcattccaggacaaccaggatttcaaggaaggccaggc
gagccaggccttcagggggctcccggccctgcaggaactaaaggtgaacctggactggat
ggaattcctggcctacctggggagaagggtgaccaaggtttaccaggtagaggttttccc
ggacttcccggtgttcttggagaaaaaggtaacaaaggagacacaggcttacctggtctc
ccaggtagtcctggaatccctggtgttaaaggagatcaagggcagccaggttttccaggg
ctgcaaggcccgcctggtttccagggaccaccgggggaagatatggaaggtccaaaaggt
gaaagaggacaaccaggattgcccggacctttaggttcacctggaccccaagggccacct
ggaattccaggaagtattggaggcaaaggagaaaaaggaacccatggcttacctgggctg
cctggacttcagggactcaagggagagcgaggcgtgcctggaattcctggaaatgctgga
ctttctggtctcaatggacagaagggtgaaatgggggctcaaggagcgccagggtttcca
ggaatgaaaggtgctaccggacatgtaggttacaaaggagaaactggtgaacggggtttt
tctggttctaagggtatcgatggccctcctggtccaccagggcctataatttcagttaaa
ggagaacgtggcttacctggccctcaaggtccacaaggaccccctggtctattaggatat
ccaggacccaagggacaacaaggtgtgagcggaattattggtttgccagggcaggatgga
attcctgggtttgatggtaggcccggacagaaaggagaacatggaccggttggccctcca
ggcccaagaggatatccaggctcaccaggccctgatggcttgccaggaccagcagggata
ccgggaccatcatccatagctcatggcttccttgttacaagacacagccagatgatagag
gtgccttcatgtccagtaggaacaacgaaaatctacgatggctattctctcttatatgtg
caaggcaatgaaagggcacatggccaagacttaggtactgctggaagctgccttcgcaag
tttagtcccatgccatttttgttctgtaacattaacaatgtctgcaactttgcatcaaga
aatgactattcctattggctgtcttcccctgaaccaatgccaatgaatatggctcccatt
actggtgaaagtatcaggccttttattagcagatgctcagtttgtgaagcaccagccatg
gtaattgcagtccacagccagacaatccagatcccacaatgtccaagtggatgggaatcc
ctgtggattggctattctttcgtcatgcacactagtgcaggcgcagagggctctggccag
gccctggcctctcctggctcctgtttggaagagttccgcagtgcccccttcatcgagtgc
cacggtcgtggaacctgcaactactatgccaatacttacagtttttggctagctactatt
gagaatggtgaactgttcaagaaacctgtctctgctacacttaaggcaggagatctacgg
acccacatcagtcgttgtcatgtctgtatgaagaagacataa
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