Polyodon spathula (Mississippi paddlefish): 121320816
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Entry
121320816 CDS
T07273
Name
(RefSeq) transcription factor Sox-1a-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121320816
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121320816
BRITE hierarchy
SSDB
Ortholog
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121320816
NCBI-ProteinID:
XP_041115407
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Position
9:39138991..39143005
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AA seq
291 aa
AA seq
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MYSMMMETDLHSPGPQTNANSAQTGINNGSKVNQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLGAGPGGPGSVGVGLGMGHAGIGQRLESPGGHGGTATSGYAHMNGWANGAYSG
PVAAAAAAAAMMQEAQLAYSQHPGTGTHHHHAHHHHPHNPQPMHRYDMTALQYSPIANSQ
SYMSASPSGYGGISYTQHQNSSVASSGTIGTLGSLVKSEPSYLKKKTPVSW
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaaccgacttgcactcccccggaccccagactaatgccaat
tcggcgcaaacgggtatcaataacgggagcaaagtcaaccaagaacgggtaaagaggccg
atgaatgcgtttatggtgtggtcccggggtcaaaggaggaagatggctcaggagaacccc
aagatgcataattccgaaatcagcaagagactgggtgcggagtggaaagtgatgtctgaa
gctgagaagagacctttcattgatgaggctaagagattacgagccatgcatatgaaagag
catccggattacaagtatagacctagaaggaagaccaaaacactgctgaaaaaagacaaa
tattccttggccggtggtctgcttggtgctgggccaggaggtcccggttccgttggagtc
ggactcgggatgggtcatgctggaatcggacagaggctggaaagtcccgggggtcacggt
ggcactgcaaccagcggctatgcgcacatgaacggctgggcaaacggtgcctattcgggc
ccagtggcagcggctgctgctgctgctgccatgatgcaggaggctcagttagcttacagc
cagcacccgggcactggaacacaccaccaccacgctcaccaccaccatccccacaacccg
cagccgatgcaccgctatgacatgacagccctccagtacagccccattgcaaactctcag
agttacatgagcgcctctccgtcggggtatgggggcatctcctacacacagcatcagaac
tcgagtgtcgcatcgtctgggaccatcggaaccctcggatcgttggtgaagtcagagcca
agttatctaaagaaaaagacgcccgtgtcatggtag
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