Polyodon spathula (Mississippi paddlefish): 121320864
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Entry
121320864 CDS
T07273
Name
(RefSeq) POU domain, class 2, transcription factor 1-like isoform X1
KO
K09364
POU domain transcription factor, class 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121320864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121320864
03021 Transcription machinery [BR:
pspa03021
]
121320864
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
121320864
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
121320864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POU2F1_C
Pou
Homeodomain
DUF3638
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
121320864
NCBI-ProteinID:
XP_041115519
LinkDB
All DBs
Position
9:41310635..41338585
Genome browser
AA seq
810 aa
AA seq
DB search
MEEQRVKMRVQEQTSFESAQQDDMQESRMSNPSETNKPTMESGDGSTDIYTTGYGPLQHL
ICWDVLAAGSKLASAQTNGLDFQRQSVQTSAITNAHAQALLHQVQLAGASLQAASQTVNF
QSKTEESADSQVSSQPSTQHSVQGALPQTPLMLAGGQITGLTLTPAQQQLLLQQAQAQLL
AAAVQHSASQQHNATGATISASAATPMTHIPLSQPIQITPDLQQLQQFQQQNLNLQQFVL
VQPGHPIATQLQPAQFIISQTPQGQQSLLQAQNLLTQLPQQSQANLLQSQPSITLTAQPA
TPTRTIAATPIQPLPQNQTTPKRIDTPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVG
LAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENLTSDQALSSPSVLNS
SGMGIEGLNRRRKKRTSIETNIRVALEKSFLEQNQKPTSEEITMIADQLNMEKEVIRVWF
CNRRQKEKRINPPSSGSMSSTPIKAIFPNPATLVPSTASLVTSNTPTTLTVNSVLPITST
AVTNTGFTGMRDTDTSAILQQLYAYYHGTTGIGSATNTASVISSTPVASSAVTSPSLSPS
PTSLSTSATESVSTHETSTTTQASTAVSSPLGTNQVMVTASGLSAALQGAATQLPANAGL
AAMAAAAGLNPGLMSSQFAPGGALLSLNPGTFGSALNPALLSNSTLIQALASGGSLPITS
LDASGNLLFANANAGGNLVTAPLFLNPQNLSLLTSNPVSLVSAAAASSGTSAQALNLQVT
SAVAESNQNVVTSAGGAAAASTITTASKAQ
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggaggagcagcgagtcaagatgagagttcaggagcagacttcttttgaaagtgcacag
caagatgacatgcaagaatcaagaatgagtaatccgtcagaaacgaataaacctacgatg
gagagtggtgatgggagcacagatatatatacaacaggatatggtccactacaacatcta
atttgctgggatgtcctggctgcaggcagcaaacttgcaagtgcccagacaaatggattg
gactttcagagacagtctgtgcaaacaagtgcaatcactaatgcacatgcacaggcatta
cttcatcaggtccagcttgcaggagcaagtttacaggctgcttctcagacagtaaatttc
cagtctaaaacagaagaatctgctgattctcaagtctcaagtcagccttccactcagcac
tcagtacagggtgctctcccacagactccgctcatgttggcaggaggacagatcactgga
ctaaccttgacgcccgcacagcagcagttgctactccaacaagcacaggctcagctgctg
gcagcagcagtccaacactctgccagtcagcaacataatgccaccggggcaaccatctct
gcatctgcagctactccaatgacacacatacccctttcacagcctatccaaataacacca
gacctgcagcagcttcagcagtttcagcagcaaaacttgaatctgcagcagtttgtgttg
gtgcagccgggacacccaattgcaacccagttgcaaccggctcagttcattatatcacag
acgccgcaggggcagcagagtctcctgcaagctcaaaatcttttaacacaactacctcaa
caaagccaagctaacctcctgcagtcacaaccaagcatcaccctcactgcacagccagct
acgccgacgcgcacaatagcggcgacacccattcagccacttccacagaaccagacgaca
ccaaagcgcatagacactcccagtttagaggagcccagtgatctggaggagttggagcaa
tttgctaaaactttcaaacagaggagaatcaaactgggattcactcagggcgatgttgga
cttgctatggggaaactgtatggaaatgattttagtcaaacaacaatctctcgctttgaa
gccttgaatctcagctttaaaaacatgtgcaagcttaaacccttgcttgaaaagtggcta
aatgatgcagagaatttgacatctgaccaagctttgtccagcccaagtgtcctgaactcc
tcaggaatgggaatagaggggctgaatcgcaggaggaagaaacgcaccagcattgagacc
aacatacgagtggccttagaaaagagttttctggagcagaaccaaaagcctacctctgag
gagatcacaatgatagctgaccagctgaacatggagaaggaggttattcgtgtctggttc
tgtaatcgacggcaaaaagagaaaagaatcaatccgcctagcagtggcagcatgagcagc
actcctattaaagcaatcttcccaaatcctgctacactagtgcccagcactgctagcctt
gtgaccagtaatacaccgactacactgactgtaaactcagttctgcctataacaagcact
gctgtaactaatactggcttcacaggtatgagggacacagatacttctgcaatattgcaa
caactttatgcttattatcacggcacaacaggaattgggtctgccactaacacagcatcc
gtgatctcatccacaccggtcgcttcctcggctgtgacctcaccttcactcagcccttcc
cctacttcattatctacgtcagccacagaatcggtcagcacacatgagaccagtaccacc
acacaagcatccactgccgtgtcttctccattgggtaccaaccaggtcatggtgacagcg
tctggactgtcagcagccttgcaaggagcagccacgcagctgcctgctaatgcaggattg
gcagctatggcagcagcagcaggacttaatcctggtctgatgtcctctcaatttgcacca
ggtggtgccttattaagcctcaatccaggaacatttggcagtgctttaaacccagcattg
ttgagcaacagtacccttattcaagctcttgcatctggcgggtcccttccaataacctct
ctggatgccagtggaaatctcttgtttgccaatgcaaatgcaggaggtaaccttgtgact
gccccattgttccttaacccgcaaaacctttctttgctcaccagcaacccagtcagcctg
gtttctgcggctgctgcctcttcaggcacttctgcacaggccctgaacctccaggtcacc
tcagctgtagccgaatcaaaccagaacgttgtcacttctgcaggcggggcggctgctgca
tcaaccatcactaccgcctccaaggcccaataa
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