Polyodon spathula (Mississippi paddlefish): 121320873
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Entry
121320873 CDS
T07273
Name
(RefSeq) cullin-4A-like
KO
K10609
cullin 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03420
Nucleotide excision repair
pspa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121320873
09124 Replication and repair
03420 Nucleotide excision repair
121320873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121320873
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121320873
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121320873
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
121320873
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
121320873
TCR (transcription coupled repair) factors
Cul4-CSA complex
121320873
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121320873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
Motif
Other DBs
NCBI-GeneID:
121320873
NCBI-ProteinID:
XP_041115552
LinkDB
All DBs
Position
9:41473865..41493750
Genome browser
AA seq
758 aa
AA seq
DB search
MMSEETGQKNNNKANFPALAEHTNGLTKPSALVTKPGTSKKLVIKNFKDRPRLSDNYTQD
TWKKLQEAVGAIQNSTSIKYNLEELYQAVENLCSYKVSATLYKQLRQVCEDHVKAQIHQF
REDSLDNVLFLKKMNKCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDTGLELFRSH
IISDKVVQSKTVDGILQLIERERNGEAVDRSLLRSLLTMLSDLQVYKDSFEQKFLKETHR
LYAAEGQSLMQEREVPEYLHHVNKRLEEETDRVITYLDQSTQKQLILTVEKQLLGEHLTA
ILQKGLHHLLDGNRITELTLLYQLFSRVKGGLQVLLQHWSEYIKTFGSALVMMPEKDKDM
VQELLDFKDKTDQITEACFQKNEKFINSMKESFETYINKRPNKPAELIAKYVDSKLRAGN
KEATDEELERILDKIMIIFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKH
ECGAAFTSKLEGMFKDMELSKDVMIQFKQFMQNQSDPGNIELTVNILTMGYWPTYIPMEV
HLPPEMVKLQEVFKMFYLGKHSGRKLQWQPTLGHAVLKSEFKEGKKELQVSLFQTLVLLM
FNEGEEFTFDEIKTATGIEDGELRRTLQSLACGKARVLIKNPKGKDVEDGDKFLFHADFR
HKLFRIKINQIQMKETIEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSELYN
QLKFPVKPGDLKKRIESLIDRDYMERDKDTPNQYHYVA
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcagaagagactgggcagaaaaacaacaataaagctaacttccctgctctagca
gagcacacgaacgggcttacaaaaccatctgccctagtcaccaaacctgggacatctaag
aaattagttataaaaaattttaaagatagaccaaggctctcggacaattacactcaggat
acatggaaaaaacttcaggaggcagtgggagccatacagaatagcacctcgattaaatac
aatctggaagagctgtaccaggcagtggaaaacctttgttcctataaggtatctgctacg
ctgtacaaacagctaagacaagtctgtgaagatcatgtcaaagcgcagatacatcagttc
agagaagattctttggacaatgttttatttcttaaaaagatgaataaatgttggcaggat
cactgtagacaaatgataatgataagaagcattttcttatttttggatcgaacatacgtc
ctgcagaattcaatgctgccctctatttgggacacgggtctggagttgttcagaagccat
ataatcagtgataaggtggtccagagtaaaactgttgacggcattcttcagctgattgag
agagaacggaacggggaggctgtagacagaagcttgttacgcagtttgctaactatgctt
tccgatctgcaggtgtataaggattcttttgaacagaagtttttgaaagagactcatcgt
ttatatgcagctgagggtcaaagcctgatgcaagagagagaggtaccagaatatcttcac
catgtcaacaaacgactagaagaggagacggatagagtaataacatacttggatcagagc
acacagaaacagctaatactcactgtggagaagcagttactcggagaacacctaacagcc
atccttcagaaagggcttcatcacctgctggatggaaacaggataactgagctcaccctc
ctgtaccagctcttcagcagggtcaaaggaggactgcaggtgcttttgcaacactggagc
gaatacattaagacctttggaagtgcactagtgatgatgcctgagaaagataaagacatg
gttcaggagctgttagacttcaaggataaaacagaccagatcactgaggcctgcttccag
aaaaatgaaaagtttatcaattctatgaaggaatcctttgagacgtatataaacaagagg
cccaacaagcctgcagaactaatagcaaagtatgttgattccaaattacgtgctggaaat
aaagaagcaacagatgaagagctggagagaatactggataagataatgatcatcttcagg
tttatccacggtaaagatgtgtttgaggcattttacaagaaagatcttgccaagaggcta
ctggttgggaagagtgcttcagtagatgctgagaagtcaatgctgtccaaactgaaacat
gaatgcggagcagcatttaccagcaaactagaggggatgtttaaagacatggagctatcg
aaagatgtcatgattcaattcaaacagttcatgcagaatcaaagtgacccgggcaacata
gaactcacagttaatatcctcacgatggggtactggcctacgtatatacccatggaggtg
caccttcctcctgagatggtgaaacttcaagaagtattcaagatgttttaccttggcaag
cacagtggcagaaagctgcagtggcagcccacacttggacatgctgttctcaagtcagag
tttaaggagggtaagaaggagcttcaggtgtccctcttccagacccttgtccttctcatg
ttcaacgaaggagaggagttcacctttgatgagattaaaacagctactggaatagaggat
ggtgagctgagaagaactctacaatctcttgcctgtggaaaagctcgagttctcattaaa
aaccccaaaggaaaagatgtggaagatggggataaattcttatttcatgctgacttcagg
cacaagttattcaggataaagataaaccagatacaaatgaaagaaacgattgaggagcaa
gtgagcacaacggagagggtgtttcaagacagacagtaccagatagacgctgccattgtc
cgcatcatgaagatgaggaaaactctgagccacaaccttcttgtgtctgagctctacaat
caactcaaattcccagtcaagcctggagacttgaagaagagaattgaatccctcattgac
agagactacatggagagagacaaggacactcccaaccagtaccattatgtggcataa
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